Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01839 ATGGGAGTCTTCACATTCGTGCTGCGCAAATCCGGCCACGAATGGACTGCAAAACAGTTCTCCGGCGACATTGAGGAGTCATCTCCGTCTACCTTCGAGATCCAAAGGAAGCTCGTTAAGGCTGCTCTCGCCGCCGATTCCTCCGGTGCCGTTCAGTCCTCTTTCTCTCTTGTTTCCCCCTCCTCTGCCGTTTTCCAGGTGATTGTGGGTGGTGCAGTATTTGTTGGAGGTGGTGCAGCTGCAGCAGCTGCTCCTGCAGGAGGTGCTGCCGCATCTGGCCAGGCTGCCCCTGCTGCGGAGAAGAAAGAAGAAAAGGTTGAGGAAGAGGAGGAGGATGATGATTTGGGATTGTCACTCTTTGATTAG 366 0.5464 MGVFTFVLRKSGHEWTAKQFSGDIEESSPSTFEIQRKLVKAALAADSSGAVQSSFSLVSPSSAVFQVIVGGAVFVGGGAAAAAAPAGGAAASGQAAPAAEKKEEKVEEEEEDDDLGLSLFD. 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01839 121 MobiDBLite consensus disorder prediction 105 121 - -
Seca6g01839 121 Pfam 60s Acidic ribosomal protein 64 120 - -
Seca6g01839 121 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED 1 121 IPR044252 GO:0003735|GO:0005840
Seca6g01839 121 MobiDBLite consensus disorder prediction 87 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01839 Seca-Chr6 75091481 75094595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01839 1 69 Cytoplasmic Ribosomal Protein Gene Family AT4G25890 68.116 6.53e-28 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01839 K02942 - gmx:100804776 95.1301