Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01835 ATGTTAGGGGAAGAGGGGAAGGAGAAGGAGAAGGAGAAGAAACCCTCCGTTGAGGGTGTTACTAGGAGAATCTATTCTCGTTCTGTTTCATGGACTGATCGGTCTCCGAATACCCGAAAGCCACCGCCACCGCCACCACCGGGAAATAGCAAACCACCACGATCATTGTTGCCACCTCTTCAGCCTCTCTCAATCAGCAAGCGTAGCGTAGAGGAATGGCCTAGCGCAGGATCTGATGATCTTGGAGTTTGGCCCCTTCCACAAACTCCAAGAGGGTCCATCAGAGCCTATGAACCCAACAAGGATTTTCAGTTCAAGAGGGACAAATTGGCCTTCTTTGATAAGGAGTGTTCAAGAATTGCTGAGCATATATACTTGGGGAGTGATACAGTAGCCAAGAATCACCAACTCCTCAGGCGAAATGGAATAACACATGTGCTCAACTGTGTTGGGTTTGTTTGTCCAGAGTATTTCAAGAGTGATTTTGTGTATAAGACACTTTGGTTGCAGGATAGCCCCACAGAGGACATCACTAGTATTCTCTATGATGTGTTTGATTACTTTGAGGATGTTAGAGAGCAAGGTGGGCGTGTCCTTGTTCATTGTTGTCAAGGGGTTTCGAGATCAACAACTCTGGTAATTGCTTACCTCATGTGGAGGGAGGGACAGAGCTTTGAAGATGCTTTTCAGTTTGTGAAGACTGCAAGGGCAGTGACTAACCCCAACATGGGTTTTGCTTGTCAACTTTTGCAGTGTCAGAAACGAGTACATGCTATGCCTGCAAGTCCAAATTCTATTCTTAGGATGTACAGGATGGCTCCTCACTCTCCCTATGACCCTCTTCATTTGGTCCCTAAAATGGTAAACCAGCCAGGTGTACAAGCACTTGATTCTCGTGGGGCATTCATTATCCATATTCCTTCTGCTATTTATGTTTGGATTGGAAAACATTGTAACTCTGTGATGTCATGCAATGCAAGGAGTGCAGCTTTTCAGGTCATCCGTTATGAGAGGGCAAAGGGACCAATTCTGAGCATCCATGAAGATGAAGAACCACCCGGATTTTGGGGTGCTCTTGCTGATAATTCTGACAAAGCAGGGGTCAAGGAGGAACCACCAGTGTTGAATTCTGAAAGCATGGAGATTGCTGATGCGGTTAATATGGGGATTGGTCCAAGAAAAGTTGATGCATATGATTTGGATTTTGAGATTTTCCACAAGGCACTTGCTGGTGGGGTTGTTCCACCTTTCTCTGTATCTAATGCTGAATCAGAAACTTGCCTTCCTGCTAGAGAACATGGTTGGGCAAGACTGAGGAGGAAGTTTGCTAGTGGTGTCATGAAAGAATTGTTAGCATCCCCCAAATGGAACTGTGATGCAACCTCATCCAATGATAAATGCAGTGTAATTGTGGAAGAAAAAAACCAAGATTCTGTTGCTGATCCTTTGTCACCATCATCAAATCATCCCTGTGGTTCACCAGATTCCTTTGAATGTTCTCCAAATGACAGCTTAGGCAGGGCAAAAGATACTGTTGAAGCCATGGACTTCTCTGTTCCTGGTGTTGCTTCAATACTGCCACTGTCTCCTCCTGGCACATCAAATCCTTTTCCTTGTTTTCTAAGCAGCAGCCCAAAATTCAATCCCAAGTCGCCAACACTTTCACCTTCAAGTTCTGATTATGCAAGTTCATTTACATTTTCACCTTCCTCTACCAATTGGTCAGACTTGTCATTTGTGTCTTCTAGGCAGCCATCACCATCTGGCCTGGAATCAACTGAACCCTTTTATGATAAAGATGTATCTTTCTCAGGAAGTTCCTCTTTACTTCACAAAGAAGATGTCTCTTCACCTTCAGAGTCATTTTTGGCTAATCACACCTTGGGAGGAGCAAATTCCAATTTGCCACTGAAAGGGTCTTTTCTCTCCATTGCAGAGCGCAGAGGGAATCCACCACCTCGGATGTTGCTATCCTCTATTAACGAATCCTCTCACGTCCACAAGAACCTGGTAAGATCACAATCATTCTCTTTGCCTGACTTAGATGATAATATGATGAAGGATGATGGTTGCAAACAATCTGATCATGAAAACTATGGAAAATGGCTAGTATCAGATGATGGTATCATTAGTTCAGGTGTTGAATCGCAGGGTGAGATTAATGACATAGAGGAACACGGTACCATGTTATGTAATATGATGGCTGAGCTTGAAGTAGAGGAGAAAGTTAATTAA 2235 0.4398 MLGEEGKEKEKEKKPSVEGVTRRIYSRSVSWTDRSPNTRKPPPPPPPGNSKPPRSLLPPLQPLSISKRSVEEWPSAGSDDLGVWPLPQTPRGSIRAYEPNKDFQFKRDKLAFFDKECSRIAEHIYLGSDTVAKNHQLLRRNGITHVLNCVGFVCPEYFKSDFVYKTLWLQDSPTEDITSILYDVFDYFEDVREQGGRVLVHCCQGVSRSTTLVIAYLMWREGQSFEDAFQFVKTARAVTNPNMGFACQLLQCQKRVHAMPASPNSILRMYRMAPHSPYDPLHLVPKMVNQPGVQALDSRGAFIIHIPSAIYVWIGKHCNSVMSCNARSAAFQVIRYERAKGPILSIHEDEEPPGFWGALADNSDKAGVKEEPPVLNSESMEIADAVNMGIGPRKVDAYDLDFEIFHKALAGGVVPPFSVSNAESETCLPAREHGWARLRRKFASGVMKELLASPKWNCDATSSNDKCSVIVEEKNQDSVADPLSPSSNHPCGSPDSFECSPNDSLGRAKDTVEAMDFSVPGVASILPLSPPGTSNPFPCFLSSSPKFNPKSPTLSPSSSDYASSFTFSPSSTNWSDLSFVSSRQPSPSGLESTEPFYDKDVSFSGSSSLLHKEDVSSPSESFLANHTLGGANSNLPLKGSFLSIAERRGNPPPRMLLSSINESSHVHKNLVRSQSFSLPDLDDNMMKDDGCKQSDHENYGKWLVSDDGIISSGVESQGEINDIEEHGTMLCNMMAELEVEEKVN. 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01835 744 MobiDBLite consensus disorder prediction 479 500 - -
Seca6g01835 744 MobiDBLite consensus disorder prediction 1 20 - -
Seca6g01835 744 ProSiteProfiles Dual specificity protein phosphatase domain profile. 116 258 IPR020422 GO:0006470|GO:0008138
Seca6g01835 744 CDD DSP 117 251 - -
Seca6g01835 744 MobiDBLite consensus disorder prediction 1 61 - -
Seca6g01835 744 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 106 258 IPR029021 -
Seca6g01835 744 Pfam Dual specificity phosphatase, catalytic domain 124 254 IPR000340 GO:0008138|GO:0016311
Seca6g01835 744 ProSitePatterns Tyrosine specific protein phosphatases active site. 200 210 IPR016130 GO:0016311|GO:0016791
Seca6g01835 744 PANTHER MKPA PROTEIN 15 669 - -
Seca6g01835 744 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 175 236 IPR000387 GO:0016311|GO:0016791
Seca6g01835 744 SMART dsp_5 116 255 IPR020422 GO:0006470|GO:0008138
Seca6g01835 744 SUPERFAMILY Actin depolymerizing proteins 262 361 - -
Seca6g01835 744 Gene3D Protein tyrosine phosphatase superfamily 98 258 IPR029021 -
Seca6g01835 744 MobiDBLite consensus disorder prediction 477 505 - -
Seca6g01835 744 MobiDBLite consensus disorder prediction 37 59 - -
Seca6g01835 744 Gene3D Severin 268 366 IPR029006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01835 Seca-Chr6 74984839 74987073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01835 36 152 Protein tyrosine phosphatase (PTP) family AT3G55270 50.376 1.99e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01835 - - lja:Lj6g3v0574850.1 1116.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06086 12 152724712 152726835 Seca6g01835 6 74984839 74987073 PCT