Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01831 ATGGAAGAAAGGGCAAAGGTTTCGTTTCTTTCATTGGCTATGGAAGAAATTAGAACTGGACGAAATCATGACTTTTTTCCCTTGGTTGTGCAAGCTGCTTTTCAAATTGAGGCTGCTAGTTTATTTGACCCACTAGACCAAGCTGCTGTTTTTGCAAGTTCCAGGTTGTTGGTTTGTGCAATTCAGGCTACTGAATTAGAGCATGGGTTTGAAGTCTGCCATCCATTTTACACTAAAGATCTAAATGGATTCACTGTTGTTGATAGCACTAACAAGTATCAAGCCTTTGGTTGGGCATACTTAAACAACCGGCACAACACATGGGACCAATTCTATGTATATTGGATTTGCCCCTTCACTGGAGCAATATTGGCTGCTTGGCTATTCCGTGCCATCTTTCCCCCCCCACCACCAGTAATAAAACAGAAGAAAGCATGA 438 0.4201 MEERAKVSFLSLAMEEIRTGRNHDFFPLVVQAAFQIEAASLFDPLDQAAVFASSRLLVCAIQATELEHGFEVCHPFYTKDLNGFTVVDSTNKYQAFGWAYLNNRHNTWDQFYVYWICPFTGAILAAWLFRAIFPPPPPVIKQKKA. 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01831 145 Gene3D Glycerol uptake facilitator protein. 48 141 IPR023271 -
Seca6g01831 145 PANTHER AQUAPORIN SIP1-1 89 145 IPR044222 GO:0015250
Seca6g01831 145 SUPERFAMILY Aquaporin-like 91 140 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01831 Seca-Chr6 74897669 74903830 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01831 91 145 Major Intrinsic Protein MIP AT5G18290 67.857 1.04e-19 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01831 K09875 - gmx:102669186 110.153