Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01830 ATGGTCGGTGCTATAAAAGCAGCAATTGGAGATGCAGTGTTAACTTTCATGTGGGTGTTCTGCTCTTCCACGCTGGGAATAGCTTCACGCACCATAACCAAAGCCCTTGACCTTCAGAACCTCTCCTACAACGGTTTCCCTTACCCTTCATTTCTTATCACAACCACCCTCGTCTTCCTCCTCGTTTTCGTCTTCAGCTTCATCGGCAACGCATTGGGTGGTGCCAGTTTCAACCCCACCGGCACCGCTTCCTTTTACGCCGTTGGTCTCGGTTCCGACACCCTCTTCTCAATGGCTCTCCGTTTCCCTGCCCAGGCGCTTGGTGCTGCAGGGGGTGCAATTGCAATTATGGAGGTGATTCCTTCGAAATACAAGCACATGATGGGGGGCCCTTCTTTGAAAGTGGACTTGCATACTGGGGCTGTTGCTGAAGGGTTGTTGACATTTGTGATTACTTTTGCTGTCCTCTTAATATTCCTAAAGGGACCTCGTAGTGATTTGATGAAGATTTGGTTGCTGGCATTGTCAACCGTTACTTTGGTCATGGTTGGATCAACCTACACCGGGCCATCCATGAATCCTGCCAATGTGAGTTACTACTTTCTTGCGTTTATCAATTCTTTCTTTTTCTTGTATGAAATTGTTTGCTACTTGCATCAGTCTAGGTATACATTTTATCATTTTATCACTATGGTTACCTGA 702 0.4658 MVGAIKAAIGDAVLTFMWVFCSSTLGIASRTITKALDLQNLSYNGFPYPSFLITTTLVFLLVFVFSFIGNALGGASFNPTGTASFYAVGLGSDTLFSMALRFPAQALGAAGGAIAIMEVIPSKYKHMMGGPSLKVDLHTGAVAEGLLTFVITFAVLLIFLKGPRSDLMKIWLLALSTVTLVMVGSTYTGPSMNPANVSYYFLAFINSFFFLYEIVCYLHQSRYTFYHFITMVT. 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01830 233 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g01830 233 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g01830 233 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g01830 233 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g01830 233 PRINTS Major intrinsic protein family signature 58 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g01830 233 SUPERFAMILY Aquaporin-like 4 198 IPR023271 -
Seca6g01830 233 PANTHER AQUAPORIN SIP1-1 3 197 IPR044222 GO:0015250
Seca6g01830 233 Gene3D Glycerol uptake facilitator protein. 3 232 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01830 Seca-Chr6 74894593 74896467 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01830 1 195 Major Intrinsic Protein MIP AT3G04090 56.923 5.16e-62 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01830 K09875 - gmx:100792787 323.939