Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01814 ATGGGAAGCAAAGGTGGAATTTTTCGTTATGCAGATGGTGGTGACAAGTTGCTATTACTATTTGGTACTTTGGGTTGCATTGGAGATGGCCTACAAACCCCTCTCACAATGCTTGTTCTTGGCAGTTTGATAGATGATTATGCTGGTGGATCTGAACATTCTGTGTCAAACCATACTATAGACAAGTACGCTCTCAGGCTTCTGGCTGTTGCCACTGGGGTTGCTTTATCTTGTTTTATTGAAGGAGTATGTTGGACAAGAACTGCAGAAAGACAAACTTCTCGCATGAGAACTGAATATCTTAAATCAGTCCTAAGACAAGAAGTTGGTTTCTTTGACAAGCAAACTGACTCTTCAACAACCTTCCAAGTAATTTCCACCATAACTTCTGATGCTCAAACCATCCAAGATACCATGGCTGATAAGGTACCTAATTGTTTGGTTCACCTCTCAGCATTTATCTCCAGCTTTATAGTGGCACTCTTCCTTTCTTGGAGACTTGCAATAGCTGCTTTTCCATTTTCAATCATGATGATCATCCCAGCACTCATATTTGGGAAGGTTATGAAAGAGCTGGGAAGTAAAATAAAGGATGAATATGGAGTTGCTGGTAGCATAGCAGAACAAGCAATCTCTTCTATTCGCACTGTTTATTCATATGTAGGTGAGAAGCAAACACTAAACAGGTTCAGCTCTGCTCTTGAAAAAAGTATGGAGCTTGGCATAAAGCAAGGTCAAACAAAGGGAGTTGTTATTGGAAGTATTGGGTTGCTTTATGCTACTTGGGCATTCCAAACATGGGTTGGGAGTGTTCTGGTCAGGACCAAAGGAGAAAGTGGTGGCCATGTGTTTTGTGCTGAAATATGTATCATTTGGGGAGGACTGTCTCTGATGAATGCACTCCCAAATCTTGCTTTCATATTAGAGGCATCAATATCTACTACCCGGATTTTTGAGATGATTGACAGAAAGCCAACTATAAACTCTAATAAAGAAAAAGGAAGGATCTTAAAACATGCAAGAGGAGAGATTACATTTAAAGAGGTTGACTTTAGTTACCCTTCAAGGCCAGATACACTTATTCTCCAAGGACTCAATCTAAAAGTGCAGGCAGGTAAAACAGTAGGCCTAGTTGGAGGGAGTGGTTCTGGCAAATCTACAATCATCTCTTTGCTTGAAAGATTTTATGATCCTGTATGTGGTGAAATATTGCTTGATGGATATGATATAAAGAGACTCCACCTTAAGTGGTTAAGGTCCCTCATGGGACTGGTAAACCAAGAGCCAATTCTCTTTGCAACATCCATAAAGGAGAACATTCTATTTGGCAAGGAAGGAGCTTCAATGGAAGCTGTTACAAGTGCAGCAAAGGCAGCAAATGCACATGATTTCATTATTAAACTTCCTAATGGATATGAAACTCAAGTAGGACAACTTGGAGCTCAATTATCTGGAGGGCAAAAGCAAAGGATTGCTATTGCAAGGGCTTTAATAAGAGACCCTAAAATCCTACTACTTGATGAAGCTACTAGTGCTTTGGATTCACAATCTGAAAGACTAGTGCAAAATGCCCTTGACTTAGCTTCTAGAGGTAGGACTACAATCATCATAGCCCATCGCCTATCTACAATTCGTAAGGCAGATTCAATAGTAGTTCTTCAATCAGGAAAAGTGGTTGAATGTGGTTCCCATGATGAACTACTTCAACTGAACAATGGACAAGGAGGGGCTTACAGCAAAATGCTACAACTACAACAAGCAACAACTCAAAATGAAAATGCACTTCATCAAATAAACAAAAGCCCCCATATAATGGAAAATCTAAGAAGTCCAAATTCAAGCTGGCATAGTACCCCAACTCATCATGCATTTAGCTCAACACAACCATTTAGCCCTATATATTCAATTAGTTTTACAGGTTCCAGCTTTGATGACTATAAGAGTGAAAACTCAGGGAAAACTTCCTATTCAAACTTCTCCCAATGGCGTTTACTACAAATGAATGCCCCTGAGTGGAAGCATGCTTTGCTTGGATGTTTAGGTGCCATTGGCTCAGGAATATGCCAACCAATTTATTCATATTGCTTGGGAATAGTTGCATCTGTCTACTTTATAAAAGATAGCTCTCAAATCAAATCACAAATCAGGTTGTACTCCTCCATCTTCTGCTGCATAGCTGTTGTAAATTTCATCTCAGGTCTCCTTCAACACTACAATTTTGCCATCATGGGAGAGAGGTTGCTAAAAAGGGTGAGAGAATTTTTGCTAGAAAAGGTGCTAACTTTTGAGGTAGGATGGTTTGACCAAGAGGAGAACACAAGTGCAGCAATTTGTGCACGTTTGGCAACTGAAGCCAACTTGGTTAGATCCCTTGTTGCAGAAAGAATGTCATTGTTAGTTCAGATTTCTGTCACAGCTACACTAGCTTTTGTACTTGGTTTAATTGTTTCATGGAGGGTGGCTATTGTCATGATTGCTATGCAGCCTTTGATCATTGCATGTTTATACTCAAAAAGCATTCTCATGAAAAGTATGTCAAGCAAAGCAAGAAGTGCTCAAAGAGAGGGTAGTCAATTAGCAATGGAAGCTACTATTAACCATAGGACTATAGCTGCATTCTCATCTGAGAAAAGGATGCTAAATTTGTTTAGAACTTCTATGGAGGGCCCCAAGAAGGAAAGCATCAAGCAATCATGGATTTCAGGTTCCATATTGTCAATGTCACAATTTATAACAACAGCATCTATAACTTTGACTTTTTGGTATGGTGGCAGGTTATTGAATCAAGGGTTAGTGGAATCAAAACATCTTTTGCAAGTTTTCCTCATTTTGATGGGCACTGGTAAGCAAATTGCAGATACAGGAAGCATGACATCTGACATAGCTAAAAGTGGAAGAGCTATGAATTCAGTATTTGCAATACTGGATAGGAAAAGTGAGATTGAACCTGAAGATCCTACACATAAAATTAAAATGTTCAAAAAGACTATGAAGGGCCATATAAAAGTGAAAGACATCTTTTTTTCATACCCTGCAAGGCCAGATCAAATGATTCTCAAGGGCCTTAGTCTTGATATTGAAGCTGGTAAAACAGTAGCATTAGTGGGACAGAGTGGCTCAGGAAAATCCACTATCATTGGCTTAATTGAAAGATTTTATGACCCCATGAAGGGATCCATATCCATAGACAATTGTGATATCAAGGAATTCAATTTGAGAAGTTTGAGATCACATATTGCCCTTGTGAGTCAAGAGCCCACCCTCTTTGCAGGAACTATACGTGACAACATTGTCTATGGGAAAGAGGATGCATCAGAAGATGAAATAAGAAGGGCAGCACGTCATGCAAATGCTCATGAGTTTATTAGTTCAATGAGAGATGGGTATGATATTTATTGTGGAGAAAGAGGAGTGCAGTTATCAGGAGGGCAGAAGCAGAGGATAGCAATTGCTAGAGCAATGCTTAAGAACCCATCAATCCTTCTCTTAGATGAGGCAACAAGTGCTCTAGACAGTGTGTCAGAGAATCTAGTGCAGGAGGCGCTGGAGAAAATGATGGTTGGAAGAACATGTGTAGTTATAGCTCACCGTTTGTCAACAATACAAAGTGCTGACTCCATAGCTGTGATTAAAAATGGGAAGGTGGTGGAACAAGGATCCCACTCAGAGTTATTGAATGTTGGATCAAATGGGGCTTATTACTCCTTAATTAGGCTACAACATGGTCACTCAACTTGA 3738 0.3973 MGSKGGIFRYADGGDKLLLLFGTLGCIGDGLQTPLTMLVLGSLIDDYAGGSEHSVSNHTIDKYALRLLAVATGVALSCFIEGVCWTRTAERQTSRMRTEYLKSVLRQEVGFFDKQTDSSTTFQVISTITSDAQTIQDTMADKVPNCLVHLSAFISSFIVALFLSWRLAIAAFPFSIMMIIPALIFGKVMKELGSKIKDEYGVAGSIAEQAISSIRTVYSYVGEKQTLNRFSSALEKSMELGIKQGQTKGVVIGSIGLLYATWAFQTWVGSVLVRTKGESGGHVFCAEICIIWGGLSLMNALPNLAFILEASISTTRIFEMIDRKPTINSNKEKGRILKHARGEITFKEVDFSYPSRPDTLILQGLNLKVQAGKTVGLVGGSGSGKSTIISLLERFYDPVCGEILLDGYDIKRLHLKWLRSLMGLVNQEPILFATSIKENILFGKEGASMEAVTSAAKAANAHDFIIKLPNGYETQVGQLGAQLSGGQKQRIAIARALIRDPKILLLDEATSALDSQSERLVQNALDLASRGRTTIIIAHRLSTIRKADSIVVLQSGKVVECGSHDELLQLNNGQGGAYSKMLQLQQATTQNENALHQINKSPHIMENLRSPNSSWHSTPTHHAFSSTQPFSPIYSISFTGSSFDDYKSENSGKTSYSNFSQWRLLQMNAPEWKHALLGCLGAIGSGICQPIYSYCLGIVASVYFIKDSSQIKSQIRLYSSIFCCIAVVNFISGLLQHYNFAIMGERLLKRVREFLLEKVLTFEVGWFDQEENTSAAICARLATEANLVRSLVAERMSLLVQISVTATLAFVLGLIVSWRVAIVMIAMQPLIIACLYSKSILMKSMSSKARSAQREGSQLAMEATINHRTIAAFSSEKRMLNLFRTSMEGPKKESIKQSWISGSILSMSQFITTASITLTFWYGGRLLNQGLVESKHLLQVFLILMGTGKQIADTGSMTSDIAKSGRAMNSVFAILDRKSEIEPEDPTHKIKMFKKTMKGHIKVKDIFFSYPARPDQMILKGLSLDIEAGKTVALVGQSGSGKSTIIGLIERFYDPMKGSISIDNCDIKEFNLRSLRSHIALVSQEPTLFAGTIRDNIVYGKEDASEDEIRRAARHANAHEFISSMRDGYDIYCGERGVQLSGGQKQRIAIARAMLKNPSILLLDEATSALDSVSENLVQEALEKMMVGRTCVVIAHRLSTIQSADSIAVIKNGKVVEQGSHSELLNVGSNGAYYSLIRLQHGHST. 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01814 1245 SUPERFAMILY ABC transporter transmembrane region 7 325 IPR036640 GO:0005524|GO:0016020
Seca6g01814 1245 FunFam ABC transporter B family member 4 991 1244 - -
Seca6g01814 1245 FunFam ABC transporter B family member 4 334 593 - -
Seca6g01814 1245 ProSitePatterns ABC transporters family signature. 483 497 IPR017871 GO:0005524|GO:0016887
Seca6g01814 1245 Gene3D ABC transporter type 1, transmembrane domain 654 977 IPR036640 GO:0005524|GO:0016020
Seca6g01814 1245 CDD ABC_MTABC3_MDL1_MDL2 344 585 - -
Seca6g01814 1245 SMART AAA_5 371 557 IPR003593 GO:0016887
Seca6g01814 1245 SMART AAA_5 1028 1220 IPR003593 GO:0016887
Seca6g01814 1245 Pfam ABC transporter 362 511 IPR003439 GO:0005524
Seca6g01814 1245 Pfam ABC transporter 1019 1168 IPR003439 GO:0005524
Seca6g01814 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 585 IPR027417 -
Seca6g01814 1245 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 317 - -
Seca6g01814 1245 Gene3D - 334 586 IPR027417 -
Seca6g01814 1245 PANTHER ABC TRANSPORTER B FAMILY 7 687 IPR039421 -
Seca6g01814 1245 Gene3D - 987 1244 IPR027417 -
Seca6g01814 1245 SUPERFAMILY ABC transporter transmembrane region 663 983 IPR036640 GO:0005524|GO:0016020
Seca6g01814 1245 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 344 580 IPR003439 GO:0005524
Seca6g01814 1245 CDD ABC_MTABC3_MDL1_MDL2 1001 1240 - -
Seca6g01814 1245 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 676 963 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g01814 1245 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1001 1237 IPR003439 GO:0005524
Seca6g01814 1245 Pfam ABC transporter transmembrane region 20 276 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g01814 1245 Pfam ABC transporter transmembrane region 677 943 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g01814 1245 ProSitePatterns ABC transporters family signature. 1140 1154 IPR017871 GO:0005524|GO:0016887
Seca6g01814 1245 CDD ABC_6TM_Pgp_ABCB1_D2_like 665 981 - -
Seca6g01814 1245 Gene3D ABC transporter type 1, transmembrane domain 7 624 IPR036640 GO:0005524|GO:0016020
Seca6g01814 1245 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 309 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g01814 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 995 1240 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01814 Seca-Chr6 74614464 74620482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01814 20 588 Calmodulin-binding Proteins AT2G36910 35.889 1.77e-104 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01814 K05658 - gmx:100804664 2095.09