Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01813 ATGGGAGAAACCGGTATCATTCTTCGCTTCCCGGGAGGAACAACAACCACCTTAGACCCCTCAGCACAAGAGTTCACACCCACCACCACCACCACTAACCACACCATTCCCTTCCCCCTTCCCCTCCCCGTCCCCGTCGCCGTCGGTTTTCCTTACCCTCACTTCGCCGCCGCTGTTGACGTCACTTCTCCGGTCCAACTGTCCACGTCACCTACCCGCTCTCTCCTCCTCAACCCCGTTCCACTCACCAGCGAATCTGCGTTACGAAATGACCTCGAGGTTTTCGGCGACGTCAGAGCCGTCCAGATGGAAGCTCTCCATCACGGAATCGTCACCGTTCATTTCTACGATCTCAGGCATGCACAGAACGCCTTCACCGCCATTCGAACCCAACACATGCACTGCGCTTCCTTCTTCAACTCTCCTCCTCAATTCTACCCAGCCCCACCGCCGCCACCAGTTGGCCTCGTTGCCGGTCGTCCCGTCTGGGCCCACTACGTCATCCCTGCCTCTAATACCCTCCTTAACGGCCACAACCAAGGCACCCTCGTCATTTTCAACTTGGACATTGACGTCTCCACTGAGAATCTTCGACAAGTTTTTGAGCCTTTTGGTCCCATAAAGGAAGTGAGAGATACCCCAGGGAAAAAGAACCAAAGATTCGTGGAGTTCTTTGACATAAGAGACGCAGGCAAGGCTTTGAAACAGATGAATGGAAGAGAAATTCATGGGAAATCCGTTATTATTGAGTTCAGTAGACCAGGGGGTCACACCAGAAAGTTCTTCCATTCCAAAAAGCCTCCTCTTCTGTCACCACCACCACCACCACCACACTTCTCTCCTCCGCGACGTCGTTTTGCTCAACCACATTTCTCTCACAAGAAATCGACGGTTAAGATTCCAAATCCTGCGTCTATTGCCGCGTCAATGGCTTCAATGAGTTTGAGTGGGGAAGGTGGAAATGCAAATGGGGTTGAAGAGAGGCATTCACAATCACATGGTCCCCCAAGGAGGAATGTTGTTAGAAAGCACAATAGCGAGACCACAGTGGAAAACACAAAGCAGCAACAACCACAACTACCAAGAAGTAGATATTGGAAGGGAAAGCATGCGAAGAAACAAGAAACTCGATTTCTAATCAAAGAAGATGCCATTGTTGAGTCCAGTTCAAAAGATTCTAGAACTACTGTGATGATCAAGAACATACCCAACAAATACAGCCAGAAGCTACTGTTAAACATGTTGGATAACCACTGCATACACTGTAACGAGCAGATTGGTGACAGCGACGACCAGCCTATATCCTCCTACGACTTCGTGTACCTTCCCATTGATTTCAACAACAAGTGCAATGTGGGATACGGGTTTGTGAATATGACATCTCCTGAGGCCACTCTCAGACTCTACAAGGCCTTCCATCTTCAGCACTGGGAGGTTTTCAATTCAAGGAAAATTTGCGAAGTCACCTACGCTAGAGTTCAGGGTTTGGAAGCATTGAAAGAGCATTTTAAGAACTCAAAGTTCCCATGCGAGATGGAGCATTACATGCCAGTGGTGTTTTCACCGCCTCGAGATGGGAGGGAAGTGACGGAGCCACTTCCAATAGTGGGGAACAAGGAGCAGCAAATGGAGAGTGGAGATAGGGTAGGTGATTCAGATTATGATAACGTGTCTAGTAGCAAAAGCGGCGGCGTGGGTGATGATGACACAAGTAATGAAGAAGTGGGTGAAGGCCTGCACCAGCTGAGCACTTCTGATGATGATACGAAAGTTTGA 1776 0.4932 MGETGIILRFPGGTTTTLDPSAQEFTPTTTTTNHTIPFPLPLPVPVAVGFPYPHFAAAVDVTSPVQLSTSPTRSLLLNPVPLTSESALRNDLEVFGDVRAVQMEALHHGIVTVHFYDLRHAQNAFTAIRTQHMHCASFFNSPPQFYPAPPPPPVGLVAGRPVWAHYVIPASNTLLNGHNQGTLVIFNLDIDVSTENLRQVFEPFGPIKEVRDTPGKKNQRFVEFFDIRDAGKALKQMNGREIHGKSVIIEFSRPGGHTRKFFHSKKPPLLSPPPPPPHFSPPRRRFAQPHFSHKKSTVKIPNPASIAASMASMSLSGEGGNANGVEERHSQSHGPPRRNVVRKHNSETTVENTKQQQPQLPRSRYWKGKHAKKQETRFLIKEDAIVESSSKDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIGDSDDQPISSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYMPVVFSPPRDGREVTEPLPIVGNKEQQMESGDRVGDSDYDNVSSSKSGGVGDDDTSNEEVGEGLHQLSTSDDDTKV. 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01813 591 MobiDBLite consensus disorder prediction 552 566 - -
Seca6g01813 591 SUPERFAMILY RNA-binding domain, RBD 182 473 IPR035979 GO:0003676
Seca6g01813 591 Pfam RNA recognition motif 2 394 504 IPR007201 -
Seca6g01813 591 PANTHER RNA RECOGNITION MOTIF-CONTAINING 389 521 - -
Seca6g01813 591 MobiDBLite consensus disorder prediction 521 591 - -
Seca6g01813 591 MobiDBLite consensus disorder prediction 314 368 - -
Seca6g01813 591 CDD RRM3_EAR1_like 394 495 IPR034458 -
Seca6g01813 591 SMART rrm1_1 182 250 IPR000504 GO:0003723
Seca6g01813 591 FunFam Terminal EAR1-like 1 341 500 - -
Seca6g01813 591 MobiDBLite consensus disorder prediction 257 301 - -
Seca6g01813 591 MobiDBLite consensus disorder prediction 267 283 - -
Seca6g01813 591 MobiDBLite consensus disorder prediction 330 349 - -
Seca6g01813 591 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 254 IPR000504 GO:0003723
Seca6g01813 591 FunFam Protein MEI2-like 1 180 268 - -
Seca6g01813 591 Gene3D - 176 261 IPR012677 -
Seca6g01813 591 Gene3D - 338 500 IPR012677 -
Seca6g01813 591 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 246 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01813 Seca-Chr6 74550867 74553317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01813 183 253 Eukaryotic Initiation Factors Gene Family AT2G23350 36.000 6.20e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01813 - - vum:124847631 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01813 6 74550867 74553317 Seca6g01813 6 74550867 74553317 ECH