Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01806 ATGGCATTTTCAGTCACACTAATGTTCCAGTTCTTGCTTCTTGCACCAGCTTTGATCTACTCTTCTCCAGTTCAAGATCCTGAATCAGTGGTCCAGGAAGTACAGAAGAGCATAAATGATCATAGAAGAAATTTGGGATTTTATTCTTGTGGGACGGGTAACCCTATTGATGATTGTTGGAGGTGTGACCCCAATTGGGAAAGGAACCGCAAGCATCTAGCAGATTGTGCAATTGGGTTTGGCAAACATGCAATTGGAGGCAGGGATGGCAAATTTTATGTGGTAAGTGACCCTAGTGATAACCCTGTGAACCCCAAGCCAGGCACATTAAGATATGGTGCTATCCAAGAAGAGCCTTTATGGATCATTTTCAAGCATGACATGGTGATCAAACTAGAGATGGATCTCTTAATGAATTCTTATAAAACCATTGATGGTAGAGGAGCAAATATCCACATTGCTGGAGGGCCTTGCATTAAGGTACAACATAAGACCAACATCATAATTCATGGCATACACATACATGATTGCAAACGAGGTGGTAGTGGAGTAAGATCGGATGGTGATGGCATAACAATATTTGGTGGGAGCCATGTTTGGGTGGACCATTGCTCCTTGTCAAATTGTTTTGATGGCCTAATTGATGTTGTTCATGGATCAACGGCTATTACCATTTCCAACAATTACATGACACACCATAACAAAGTCATGCTATTGGGCCACAGTGATTCTTATGAAGCTGACAAGAAGATGCAAGTTACCATAGCATTTAACCATTTTGGAGAAGGGCTTGGTGGAAGAATGCCAAGGTGCAGGTTCGGATACTTCCATGTGGTGAACAATGATTACACCCATTGGCAACAGTACGCTATAGGTGGGAGTTCATCCCCAACTATTTTCAGCCAAGGCAACAGATTTCTTGCTCCAAATGACGAAGACCACAAAGAGGTCACCAAACACTTTCGTTCATCAGAGGGTGAGTGGAAGACATGGGATTGGAGGTCTGAAGGGGATCTAATGTTGAATGGTGCCTTCTTCACACCGTCTGGAGCTGGAGCATCTTCTAAATATGATAAAGCGTCAAGCATGTCAGCAAGACCACCTATGCTTGTGGCTTCAATGACAGCAGGGGCTGGAGCCCTTAGATGCAAAAGGGGTTATATGTGTTACTAG 1173 0.4339 MAFSVTLMFQFLLLAPALIYSSPVQDPESVVQEVQKSINDHRRNLGFYSCGTGNPIDDCWRCDPNWERNRKHLADCAIGFGKHAIGGRDGKFYVVSDPSDNPVNPKPGTLRYGAIQEEPLWIIFKHDMVIKLEMDLLMNSYKTIDGRGANIHIAGGPCIKVQHKTNIIIHGIHIHDCKRGGSGVRSDGDGITIFGGSHVWVDHCSLSNCFDGLIDVVHGSTAITISNNYMTHHNKVMLLGHSDSYEADKKMQVTIAFNHFGEGLGGRMPRCRFGYFHVVNNDYTHWQQYAIGGSSSPTIFSQGNRFLAPNDEDHKEVTKHFRSSEGEWKTWDWRSEGDLMLNGAFFTPSGAGASSKYDKASSMSARPPMLVASMTAGAGALRCKRGYMCY. 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01806 390 Gene3D - 53 382 IPR012334 -
Seca6g01806 390 SMART amb_all 127 312 IPR002022 -
Seca6g01806 390 PANTHER PECTATE LYASE 18-RELATED 25 386 IPR045032 GO:0030570
Seca6g01806 390 SUPERFAMILY Pectin lyase-like 39 383 IPR011050 -
Seca6g01806 390 PRINTS Pollen allergen Amb family signature 135 151 IPR018082 -
Seca6g01806 390 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Seca6g01806 390 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Seca6g01806 390 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
Seca6g01806 390 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Seca6g01806 390 PRINTS Pollen allergen Amb family signature 360 383 IPR018082 -
Seca6g01806 390 PRINTS Pollen allergen Amb family signature 267 286 IPR018082 -
Seca6g01806 390 Pfam Pectate lyase 138 306 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01806 Seca-Chr6 74339556 74342657 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01806 3 389 Polysaccharide Lyase AT5G63180 69.059 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01806 K01728 - gmx:100801136 713.761