Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01802 ATGGCAATTCCTCTCTCATTTATGCTACTCTTGCTATTTCTTGTACCCTCCTTCATTTGCTCTTCCCCACTTCAAGATCCTGAATTAGTAGTTGAAGAAGTACAAAAAACCTTTTGTGTTTTTTTTTATTGCAGGAGCATTAATGCCTCAAGGAGAAACTTAGTATTTCTTTCTTGTGGTACTGGCAACCCTATTGATGATTGTTGGAGGTGTGACCCCAATTGGGAAAAGAATCGCCAGCGTTTAGCAGATTGTTCTATTGGTTTTGGTAAGCATGCAATTGGAGGCAGGGATGGTAAAATATATGTGGTAACTGACCCTGGTGATCACCCTGTGAATCCCAAGCCAGGAACTTTAAGATATGGTGTTATACAAGAAGAGCCATTGTGGATCATATTCAAGCGTGACATGGTGATTAAACTTAAGCAAGAGCTTATGATGAATTCTTTCAAAACTATTGATGGTAGAGGAGCAAATGTGCACATTGCTGGTGGACCTTGTATTACTATACAATTTGTTACTAATATTATCATTCATGGGATTAATATTCATGATTGCAAAAGGGGAGGGAATGCCTATGTGAGGGATTCCCCTACTCATTATGGTTTTAGGACTCTTTCAGATGGTGATGGGGTGTCAATTTTTGGTGGAAGTCATGTTTGGGTGGACCACTGTTCTCTCTCCAATTGCCGTGATGGACTAATTGATGTCATTCATGGATCTACAGCTATCACCATCTCCAACAATTATTTGACACACCATAACAAGGTCATGCTTTTGGGGCATAGTGATTCTTTTACTAGAGACAAGAATATGCAAGTCACCATTGCTTTTAACCATTTTGGAGAAGGACTAGTTCAGAGAATGCCAAGATGCAGGCATGGATACTTTCATGTGGTGAACAATGACTACACTCAATGGCAAATGTATGCCATAGGGGGGAGTGCTGCTCCAACTATTAACAGCCAAGGCAATAGATTTCTTGCTCCCAATGACATGACATTCAAAGAGGTCACAAAGAGGGAGAATGCACCACAGAGCCAATGGAAGAAGTGGAATTGGAGGTCTTCAGGAGATTTGATGTTAAATGGTGCCTTTTTTACAGCATCAGGTGCAGGTGCATCTTCAAGCTATGCCAGAGCATCAAGTTTGGCAGCAAAATCATCTTCTTTGGTCAGTTCTATCACAGCATCAGCTGGATCACTTAACTGCAGAAAGGGATCACGCTGCTGA 1233 0.4112 MAIPLSFMLLLLFLVPSFICSSPLQDPELVVEEVQKTFCVFFYCRSINASRRNLVFLSCGTGNPIDDCWRCDPNWEKNRQRLADCSIGFGKHAIGGRDGKIYVVTDPGDHPVNPKPGTLRYGVIQEEPLWIIFKRDMVIKLKQELMMNSFKTIDGRGANVHIAGGPCITIQFVTNIIIHGINIHDCKRGGNAYVRDSPTHYGFRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDVIHGSTAITISNNYLTHHNKVMLLGHSDSFTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTQWQMYAIGGSAAPTINSQGNRFLAPNDMTFKEVTKRENAPQSQWKKWNWRSSGDLMLNGAFFTASGAGASSSYARASSLAAKSSSLVSSITASAGSLNCRKGSRC. 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01802 410 SUPERFAMILY Pectin lyase-like 48 404 IPR011050 -
Seca6g01802 410 Gene3D - 62 403 IPR012334 -
Seca6g01802 410 PRINTS Pollen allergen Amb family signature 85 102 IPR018082 -
Seca6g01802 410 PRINTS Pollen allergen Amb family signature 352 376 IPR018082 -
Seca6g01802 410 PRINTS Pollen allergen Amb family signature 144 160 IPR018082 -
Seca6g01802 410 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Seca6g01802 410 PRINTS Pollen allergen Amb family signature 208 229 IPR018082 -
Seca6g01802 410 PRINTS Pollen allergen Amb family signature 381 404 IPR018082 -
Seca6g01802 410 PRINTS Pollen allergen Amb family signature 108 133 IPR018082 -
Seca6g01802 410 PRINTS Pollen allergen Amb family signature 288 307 IPR018082 -
Seca6g01802 410 SMART amb_all 136 333 IPR002022 -
Seca6g01802 410 FunFam Pectate lyase 62 403 - -
Seca6g01802 410 PANTHER PECTATE LYASE 18-RELATED 25 408 IPR045032 GO:0030570
Seca6g01802 410 Pfam Pectate lyase 142 327 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01802 Seca-Chr6 74304052 74306729 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01802 5 410 Polysaccharide Lyase AT5G63180 75.303 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01802 K01728 - gmx:100816256 735.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01802 6 74304052 74306729 Seca6g01802 6 74304052 74306729 ECH
Seca6g01802 6 74304052 74306729 Seca12g01666 12 18145809 18148293 ECH
Seca6g01802 6 74304052 74306729 Seca4g02926 4 50347346 50349644 ECH