Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01791 ATGTCAATGGAGTGGTTGGATTTCTTCTTGGTGGCAACAACTACCTTAGGCTTCATCTCTGTGTGTAAAACTCTCATCCATTTTCTCAAGTGGGTGTGGGTGATGTTCTTGAGGCCACCAAAACAACTCAAACAATATGGTTCATGGGCTATAATTACTGGCTCCACTGATGGAATTGGCAAGGCCTTGGCCTTTGAGTTTGCATCTAAGGGACTTAATCTTCTCTTGGTTGGTAGAAACCCTCTAAAACTTGAGTCAACATCTAAGGAGATAAGAGAGAGACATGAGCATGTTAAGGTGAAGTTTGTAGTCATAGACATGCAGAAAGTTGATGGAGAGGAAATAACAAAAAGGGTAGAGGAAGCAATAGATGGTTTAGATGTAGGAATTCTGGTTAATAGTGCAGGCTTGGCTTACCCTTATGCAAGGTTCTTTCATGAGGTTGATTCGGAGTTGATGGATGCTATTATCAAAGTGAACGTGGAAGGAACTACTTGGATCACAAAGGCAGTGCTTCCAAGTATGATCAAGAAGAAAAAGGGAGCAATCATAAACATTGGCTCTGGTTCCACTGTTGTGCTTCCTTCATATCCTTTAGTCACTCTCTATGCTGCTACAAAAGCATATCTTGCAATGTTCTCGACAAGCATCAGTTTGGAATACAAGCATCAAGGAATAGACATCCAGTGTCAGGTTTTCTGTTGCCTCTCCTCTTCGCCTTCATGTTTTGTGATATTGCCAACTCATCCAGAGATATTGATCATTGCTACCTACCCTTAA 780 0.4141 MSMEWLDFFLVATTTLGFISVCKTLIHFLKWVWVMFLRPPKQLKQYGSWAIITGSTDGIGKALAFEFASKGLNLLLVGRNPLKLESTSKEIRERHEHVKVKFVVIDMQKVDGEEITKRVEEAIDGLDVGILVNSAGLAYPYARFFHEVDSELMDAIIKVNVEGTTWITKAVLPSMIKKKKGAIINIGSGSTVVLPSYPLVTLYAATKAYLAMFSTSISLEYKHQGIDIQCQVFCCLSSSPSCFVILPTHPEILIIATYP. 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01791 259 PANTHER RH59310P 5 234 - -
Seca6g01791 259 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 190 218 IPR020904 GO:0016491
Seca6g01791 259 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Seca6g01791 259 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 137 IPR002347 -
Seca6g01791 259 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 181 189 IPR002347 -
Seca6g01791 259 PRINTS Glucose/ribitol dehydrogenase family signature 126 137 IPR002347 -
Seca6g01791 259 PRINTS Glucose/ribitol dehydrogenase family signature 175 191 IPR002347 -
Seca6g01791 259 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Seca6g01791 259 PRINTS Glucose/ribitol dehydrogenase family signature 203 222 IPR002347 -
Seca6g01791 259 Pfam short chain dehydrogenase 49 230 IPR002347 -
Seca6g01791 259 CDD 17beta-HSD1_like_SDR_c 47 230 - -
Seca6g01791 259 Gene3D - 42 236 - -
Seca6g01791 259 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 47 230 IPR036291 -
Seca6g01791 259 FunFam Hydroxysteroid (17-beta) dehydrogenase 3 43 248 - -
Seca6g01791 259 PIRSF 11-beta-HSD1 1 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01791 Seca-Chr6 73973929 73976641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01791 16 232 Lipid Metabolism Gene Families AT1G67730 55.300 2.84e-88 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01791 K10251 - gmx:100816067 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01791 6 73973929 73976641 Seca6g01791 6 73973929 73976641 ECH
Seca12g06020 12 152068624 152072072 Seca6g01791 6 73973929 73976641 PCT