Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01776 ATGAACAACAATTATAGTGATAGAGGCAATGATAGTTCTGATGAAAGTCATAGTGAAGATAACAATGATGTGGGTAATCATAATGAGGCAGTGGACGAAGATTTAACATATGAACAGTATAAAAGTATAATAGACCTAACTGCGAATGACGTTCGAGGTATGGAGTTTGGTAGTGAAGAGCATGCATGTAAATTTTATGATTCATATGCTAGGTGTCATGGCTTTGTTGCAAGAAAAGATGATATAAAACGTGATGCGGAAGACAATATTATAATGCGTCAATTGGTTTGCAACAAAGAGGGGTTGAGAAATAAAAAGCACTTTATAAGGTTGGATAGAAAGAGACCTCATAGGCCAATCACTCGTACTAGTTGTCAAGCTAAGCTTAGAGTACACTTTGATTACAAGAGATCAAAATGGACAGTCTTGTCCTTTGTGGAGACTCATAATCATTATTTATGTCCACCAAAATATAGACACTTAATCCCTGCACATCGCAAGATGGGTGATACAGATAAAGCTCAAGCGGAAAGTTTGCATTCCTATGGAGTTAGGACTTGTCACATTATGGGATATATGTTGGCTCAGAAAGGTGGGTATAGTGCTTTAGGGTTTACCAAAAAGGATATGTACAATTATTTTAGTGAGAAAAACCGTGAGAAGATCAAAGATGGGGATGCATGCATTGCATTAAGTTATTTACAAGGCAAGGCAGATAATAATGGATTGATGCATTCATCATATTCATTTACAAGTGATGGTAAATTGAAGAATTTGTTCTGGGCAGATGAAGTTAGTAGAAGTGATTTTCAGTGCTTTGGTGATGTTCTAGCATTTGACACCACTTACAAAAAAAACAAGTACAACAGACCTCTAGTGATTTTCTCCGGTTGCAATCATCATTCACAGACTGTTATCTTTGGTTGTGCCTTGGTGAGTGATGAAACAATTGATACTTATAAGTGGCTGTTAGAATCCTTTTTAGATGCTATGTGGAATAAACATCCTAAAGCTGTGGTGACAGATGGTGATGGGGCTATGAGGGAGGCGATCAAGCAAGTTTTTCCAAATGCAACCCATAGACTCTGTGCGTGGCACTTACATAAGAATGCATGTGAGAATGTGAAGAATTCCTCATTCTTAGGGGATTTCAAGACTGCAATGTATGCTAATTTTACACCAGAAAAATTTGAAAATTTTTGGCAGCAATTGATTTTGAAACACGGGCTTGTAGAAAACAAGTGGGTTTCTAAAACCTATGAGAACAAGTATATGTGGGCTAGTGCATACTTGCGTGATAAGTTCTTTGGTCGTATAAGGACAACTTCACAATGTGAAGCCATTAATTCTCTTGTCAAGTCATATGCTAATAACAAATGTAGCATTATTGACTTCATGCATAAATTTGAGCAAGTGGTGAGGGAATATAGAAACAATGAGCTCATGGCAGATTTTAAGTGTTTCTGGTCAGAACCTGTGCTAACCACTTCTCTTTACAAGATTGAGCGTGATGCTTCAAAAATTTTCACCCAAGAGATTTTTAAGGATGTTAAATCTGAAATTGAAGCTGCTGGTGCCTTGAATGTTATTGAACGTGTGATAAATGGTGAGAAATTAATATTGAAGATGAACAAATATTGTGATATTGGAAGTGAATTTGTTGTTGATTATGATACTGTGAACTGTAATTTTTTCTGTGAATGCAAACTATTTGAATCTCGTGGCATTCCATGTGCTCATATTATATGTGCCATGAAAAATGAGCACATAGACTCCATTCCTAGCAGTTTGATATGCAAACGGTGGACAAAAACTGCGAAGAGTGATATTATTTCTGCAAGTCGATTGGATGATTTAGATTCTGATGTCATGTCTGGGGCCCGTGTTGGGGCTGCAGCTGCTGCTTGTAATAGATTATGCAGTATTGCTAGAGAGAAGAATGCATGTTTCAATGATATTTTAAATGATATCTTTAAGCTGCTTAATAAGTATGAGAATCAAGGGGATCCAAACAGCACAGTTAGGTCATCTTTTAAGGATGTGGGTGATCCATATTTAGTGAAAACAAAAGGTGCTCCATCCAAGAAAAAGTACGGAAGGAAGAGGAGATGTTCAAATTGTAGTAGACCTGGACACATAGCTAGGAAATGTCCTAGGCTCCTTTCCACGGATGATCAAGTTCCTATGGATGGTGATTCTTCACATTCAGATGGTGATGGTTTCACAATAGGAGAAGAAAATGTAATTTTTTTATAA 2256 0.3692 MNNNYSDRGNDSSDESHSEDNNDVGNHNEAVDEDLTYEQYKSIIDLTANDVRGMEFGSEEHACKFYDSYARCHGFVARKDDIKRDAEDNIIMRQLVCNKEGLRNKKHFIRLDRKRPHRPITRTSCQAKLRVHFDYKRSKWTVLSFVETHNHYLCPPKYRHLIPAHRKMGDTDKAQAESLHSYGVRTCHIMGYMLAQKGGYSALGFTKKDMYNYFSEKNREKIKDGDACIALSYLQGKADNNGLMHSSYSFTSDGKLKNLFWADEVSRSDFQCFGDVLAFDTTYKKNKYNRPLVIFSGCNHHSQTVIFGCALVSDETIDTYKWLLESFLDAMWNKHPKAVVTDGDGAMREAIKQVFPNATHRLCAWHLHKNACENVKNSSFLGDFKTAMYANFTPEKFENFWQQLILKHGLVENKWVSKTYENKYMWASAYLRDKFFGRIRTTSQCEAINSLVKSYANNKCSIIDFMHKFEQVVREYRNNELMADFKCFWSEPVLTTSLYKIERDASKIFTQEIFKDVKSEIEAAGALNVIERVINGEKLILKMNKYCDIGSEFVVDYDTVNCNFFCECKLFESRGIPCAHIICAMKNEHIDSIPSSLICKRWTKTAKSDIISASRLDDLDSDVMSGARVGAAAAACNRLCSIAREKNACFNDILNDIFKLLNKYENQGDPNSTVRSSFKDVGDPYLVKTKGAPSKKKYGRKRRCSNCSRPGHIARKCPRLLSTDDQVPMDGDSSHSDGDGFTIGEENVIFL. 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01776 751 ProSiteProfiles Zinc finger SWIM-type profile. 553 589 IPR007527 GO:0008270
Seca6g01776 751 SMART c2hcfinal6 703 719 IPR001878 GO:0003676|GO:0008270
Seca6g01776 751 MobiDBLite consensus disorder prediction 10 32 - -
Seca6g01776 751 Gene3D - 687 731 - -
Seca6g01776 751 PANTHER OS01G0519700 PROTEIN 51 703 - -
Seca6g01776 751 Pfam Zinc knuckle 703 718 IPR001878 GO:0003676|GO:0008270
Seca6g01776 751 Pfam MULE transposase domain 276 370 IPR018289 -
Seca6g01776 751 MobiDBLite consensus disorder prediction 1 32 - -
Seca6g01776 751 SUPERFAMILY Retrovirus zinc finger-like domains 694 723 IPR036875 GO:0003676|GO:0008270
Seca6g01776 751 Pfam FAR1 DNA-binding domain 64 154 IPR004330 -
Seca6g01776 751 SMART 26again6 564 591 IPR006564 GO:0008270
Seca6g01776 751 ProSiteProfiles Zinc finger CCHC-type profile. 702 719 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01776 Seca-Chr6 73691262 73693517 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca6g01776 MULE 4.7e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01776 - - ccaj:109792835 919.457