Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01765 ATGGGACCCTTTGTACAACCACGCCGAGGAAGGCGCTACCAAGAGAAGGAGAAATGCAATGGAGATTCCAAGCCCGAGCTCGAGCCAAAAGATAAGGATAAGGAAGATAATGATTCTCGTGCTATTACAATTAATACATCTCATTATGAGCCTTTATCTACAGAAAGTGACAATGTTTGGTCATTGATTCCTGAGCTCAGTAAGAAGATGCATGACCATCAGAAGAAAGGTTTTCTATTTATTTGGCAAAATATTGCAGGGTCAATACAACCAACACTTATGGAAGTAGAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAAGTTATTCCCAGATAAAAAGCCTTTGATCCTTGCTCCAAAAACTACACTTTATACTTGGTACAAGGAATTCATCAAGTGGGAGATTCCTATTCCAGTGTATCTAATTCATGGTCGTAAAAACTTGAGAGATTTTGATGAAACACCATTGACTATTCCTGGAGTTCCAAACCCCACCAGTGATGTCAAGCATGTTTTGGATTGCCTTGAAAAGATTAAAAAGTGGCATCTACACCCTAGTGTTTTGGTCATGGGGTATACTTCATTTTTTTCACTAACGAGAGAGAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGGGAAAGCACTGGGATCCTTATACTCGATGAAGGGCACAATCCTAGAAGCACCAAGTCAATGTTGAGGAAAGGGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCTGGTACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCAAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATATAAAACAAAAGAAGGGAAATGATAAAAATCCAGAGAAAGCACAACATTTACTTGAGACATGTGCTAGGAAATTCTTCCTAGATGAAATTGCTAACAAAATTAACTCAAGTGATGATGAAGTGAGGATGCTGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGACAAGCTTCCTGGTTTGAAAATTTATACTCTGCTTATGAACCTAACTGATGTGCAGAATGAGCTTTTGCAGAAACTGCAAAAGAAAATGGTTGGGTCCAGCGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGCTCAAAACAGCAACAAGTGCGAATAAGTTTTACACTTCACAGGAGCTAAACCAGCTAGAGAAGTTCAAGTCTGATTTTAGGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCTTTCATGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTTTAGTACAGTTGTTTGAGGAGTGCTTCAAATGGAAAAAAGATGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGAGAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTACTTGCTTCAATTACAGCTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCGGAGTGGAATCCATCAAAGATAAAGCAGGCAATTGCAAGGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTATCGCAGAACCACTTGGAAAGAATGGATTTCAAGCATGATTTTCAGTGAGGATTTTGTGGAGAACCCTTCCCAGTGGCAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATAGTTGAGAATGACGAATCCAAAGCAATCCATATGATCATGAAGAATGAAAAAGCTTCAAAAAACTAA 1953 0.3881 MGPFVQPRRGRRYQEKEKCNGDSKPELEPKDKDKEDNDSRAITINTSHYEPLSTESDNVWSLIPELSKKMHDHQKKGFLFIWQNIAGSIQPTLMEVESERRGGCVISHTPGAGKTFLVIAFLVSYLKLFPDKKPLILAPKTTLYTWYKEFIKWEIPIPVYLIHGRKNLRDFDETPLTIPGVPNPTSDVKHVLDCLEKIKKWHLHPSVLVMGYTSFFSLTRENSKYEHKKYMAKALRESTGILILDEGHNPRSTKSMLRKGLMKVETELRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDIKQKKGNDKNPEKAQHLLETCARKFFLDEIANKINSSDDEVRMLGLNMLRKITSGFIDVYESGNSDKLPGLKIYTLLMNLTDVQNELLQKLQKKMVGSSVFPLEGELMVTLGSIHPWLLKTATSANKFYTSQELNQLEKFKSDFRVGSKVRFILSLIFHVVKEEKVLIFCRNLAPMKLLVQLFEECFKWKKDGEILLLYGEQDLFERGKVIEKFEDPCGVSKVLLASITACAEGISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKMVYVYQLLAKGSMEEDKYRRTTWKEWISSMIFSEDFVENPSQWQAEKIEDDILREIVENDESKAIHMIMKNEKASKN. 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01765 650 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 8 648 IPR044567 GO:0080188
Seca6g01765 650 Pfam SNF2-related domain 97 398 IPR000330 GO:0005524|GO:0140658
Seca6g01765 650 CDD SF2_C_SNF 445 581 - -
Seca6g01765 650 Pfam Helicase conserved C-terminal domain 453 569 IPR001650 -
Seca6g01765 650 MobiDBLite consensus disorder prediction 1 46 - -
Seca6g01765 650 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 634 IPR027417 -
Seca6g01765 650 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 296 IPR027417 -
Seca6g01765 650 Gene3D - 373 650 IPR027417 -
Seca6g01765 650 Gene3D - 39 332 IPR038718 -
Seca6g01765 650 MobiDBLite consensus disorder prediction 9 41 - -
Seca6g01765 650 SMART helicmild6 481 570 IPR001650 -
Seca6g01765 650 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 456 617 IPR001650 -
Seca6g01765 650 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 95 294 IPR014001 -
Seca6g01765 650 SMART ultradead3 66 306 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01765 Seca-Chr6 73414587 73416710 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01765 499 588 RAD5 or RAD16-like Gene Family AT5G05130 41.758 3.39e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca6g01765 SNF2_N 3.7e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01765 K10875 - gmx:100811703 899.042