Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01758 ATGAAGCTTTTAGTACAGTTGTTTGAGGAGTGCTTCAAATGGAAAAAGGATGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGAAAAGTGATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAATGTACTACTTGCTTCAATTACAGCTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCAATTGCAAGGGCTTTTCGTCCTGGCCAGGATTTTGTGGAGAACCCTTCCCAGTGGCAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATAGTTGAGAATGACGAGTCCAAAGCAATCTATATGATCATGAAGAATGAAAAAGCTTCAAAAAACTAA 408 0.3897 MKLLVQLFEECFKWKKDGEILLLYGEQDLFERGKVIDKFEDPCGVSNVLLASITACAEGISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQDFVENPSQWQAEKIEDDILREIVENDESKAIYMIMKNEKASKN. 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01758 135 CDD SF2_C_SNF 7 92 - -
Seca6g01758 135 Gene3D - 1 132 IPR027417 -
Seca6g01758 135 SMART helicmild6 2 91 IPR001650 -
Seca6g01758 135 Pfam Helicase conserved C-terminal domain 10 90 IPR001650 -
Seca6g01758 135 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 95 IPR027417 -
Seca6g01758 135 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 134 IPR001650 -
Seca6g01758 135 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 93 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01758 Seca-Chr6 72864072 72864587 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01758 20 135 RAD5 or RAD16-like Gene Family AT5G05130 34.188 1.69e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01758 K10875 - ath:AT3G42670 185.652