Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01756 ATGGGGTATACTTCATTTTTATCACTAACGAAAGAGAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGGGAAAGAACTGGGAATCTTATACTCGATGAAGGGCACAATCCTAGAAGCACCAAGTCAAGGTTGAAGAAAGGGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCTGGTACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCAAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATATAAAACAAAAGAAGGGAAATGATAAAAATACAGAGAAAGCACAACATTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTAACTCAAGTGATTATGAAGTTAGGATGCAGGGTTTGAACATGTTGAGGAAAATCATAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGACAAGCTTCTTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACTGATGTGCAGAATGAGCTTTTGCAGAAACTGCAAAAGAAAATGGTTGGGTCCAGCGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTGCGGATAAGTTTTACACTTCACAGGAGCTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCTTTCATGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTTCCGCAACCTTGCACCTATGAAGCTTTTAGTACAGTTGTTTGAGGAGTGCTTCAAATGGAAAAAGGATGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAAAGGGAAAGTGATTGATAAGTTTGAGGATCCATGTGGAGATTCAAAGGTACTACTTGCTTCAATTACAACTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCGAAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGTTTTTCGTCCTGGCCAGGAAAAGATGGTTCATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTATCGCAGAACCACTTGGAAAGAATGGGTTTCCAACATGATTTTCAGTGAGGATTTTGTGGAGAACCCTTCCCAGTGGCAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATAGTTGAGAATGACGAGTCCAAAGCAATCCATAGGATCATGAAGAATGAAAAAGCTTCAAAAAACTAA 1326 0.3831 MGYTSFLSLTKENSKYEHKKYMAKALRERTGNLILDEGHNPRSTKSRLKKGLMKVETELRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDIKQKKGNDKNTEKAQHLLETRARKFFLDDIANKINSSDYEVRMQGLNMLRKIISGFIDVYESGNSDKLLGLQIYTLLMNLTDVQNELLQKLQKKMVGSSVFPLEGELMVTLGSIHPWLIKTATSADKFYTSQELNQLEKFKSDFRVGSKVRFILSLIFHVVKEEKVLIFFRNLAPMKLLVQLFEECFKWKKDGEILLLYGEQDLFEKGKVIDKFEDPCGDSKVLLASITTCAEGISLTAASRLIFLDSKWNPSKIKQAIARVFRPGQEKMVHVYQLLAKGSMEEDKYRRTTWKEWVSNMIFSEDFVENPSQWQAEKIEDDILREIVENDESKAIHRIMKNEKASKN. 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01756 441 Pfam SNF2-related domain 12 120 IPR000330 GO:0005524|GO:0140658
Seca6g01756 441 Gene3D - 167 441 IPR027417 -
Seca6g01756 441 Pfam Helicase conserved C-terminal domain 244 360 IPR001650 -
Seca6g01756 441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 423 IPR027417 -
Seca6g01756 441 Gene3D - 4 128 IPR038718 -
Seca6g01756 441 CDD SF2_C_SNF 236 372 - -
Seca6g01756 441 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 247 408 IPR001650 -
Seca6g01756 441 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 439 IPR044567 GO:0080188
Seca6g01756 441 SMART helicmild6 272 361 IPR001650 -
Seca6g01756 441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 87 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01756 Seca-Chr6 72719369 72720694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01756 290 379 RAD5 or RAD16-like Gene Family AT5G05130 39.560 1.53e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca6g01756 Helicase_C 4.1e-11 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01756 K10875 - gmx:100811703 612.453