Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01747 ATGGCTATTTTGGATTCTCTGTTGGGAGTGATCAATGTGGCATTCTTTTACACCATGTTGGTTTGGCTTTTGGTACACAGTTTGAGAGAAAGCAGGCGTAACTGCGTTTTATATTTGAAAGGAGGGTGCACAAGATATGCTATTTTTGCCACCAGCACTGTTTTATCTAATGTTGTTATATCAGTTTTTAACATAGGTTTTGCCATCTATGAATATAGCAGTAGAAGAATTATAGGGTATTACTCTGTTTCCTTGGCCTTAACTTGGGTTTTAGCAACTATAGTCTCATTATATTCAATGAAGAGAATATTCAAGGAGAACCAAAGGTGGCCACTTGTCCTAGTCCTCTGGTGGCTCTTTGCCAGTATCTTATACACTGCCTCAGTCTATCTGAAATTAACAAAGAATTTCAAATCACTGAATCTATGGTTTTTCCTGTTAGAGGATAACATAGTTGATATGGTTTCCTTTCCTTTGTTGTTATTGCTTTGTTTCAATGCTTTGCACACTGTTTTTGCTTGGAAATGGAAACCCAACGATATGGAACAACTCTTACTTGAGAAGGAATTACCAATACCATCCTCTTTGGAAGAAGATGGAGAAACCTTCACAAACGCAAACATATGGAGCAAACTCACATTCCTATGGCTGAACCACATTTTCAAGAGAGGGAGAATTCAAAAACTTGAACTTCCTCATATTCCTTCTGTTCCTCATTCTGAAACAGCAGAGAATGCCTCCTCCATGTTGGAAGATTCAATTGGAAATCAGAAACTTGAAGGGGTTTCTTTGACCAAAGTTATTGTCCATTCTATCTGGAAATCCTTGGTCTTGAATGCAATTTTTGCAGGAGTTAACACAATTGCCTCTTACATGGGTCCCTTGTTGATCACAAATTTTGTGAGTTTCTTATTGGACAAGGATGATAGTTCAAGCAACCAATATGGGCTGATTCTTGCATTTATTTTCTTCCTGTTGAAGATGGTGGAGTCACTAAGTCAAAGGCAATGGTATTTTGGTGCTCAACAAATTGGAATTCGGGTACGGGCAGCACTTATGGTGCTGATTTATAAAAAGTCCTTATCAATTAAGCATGCTGGTAAAATCACAAATTTGATCAATGTTGATGCTGAAAGAATTGGGGACTTTTGCTGGTACAGTCATGGAGTTTGGTTGCTTCCAGTTCAAGTCATTCTGGCTTTGGTGATCTTATGTAGGAATTTAGGTTATATCCCATCCATTGCAGCATTTGTTGTCACTATTTTGGTTATGATATTCAATACACCTTTGGCTAATGTCCAAAAAAGTTTCCACTCTAAGATCATGGAAGCTAAGGATTCAAGAATCAAAATGACTTCAGAGACCTTGAAGAACATTAGAATTTTAAAAATGCATTCTTGGGAGTCCATTTTCTTGAAGAAACTTCTCCACCTAAGGAAAATGGAGAGGGGGTGGCTGCAGAAATACCTCTACACATGTTCAACAGTAGCCACTCTATTTTGGACATCTCCAACATTAGTTTCTGCTGTCACTTTTGGTGTCTGTTTACTGGTGAAAACAGAATTAACAGCAGCTACAGTTCTATCAGCTTTAGCAACTTTTCGTATTTTACAAGAACCAATCTACAACCTACCTGAGCTTATCTCCATTATAGCTCAAACAAGAGTATCTGTTGATCGAATCCAGGAGTTCATCAACCAAGAGGATAAAACACTTTTTGTGATTAGTCATGCTTTAAAATCTTCTTCTGAAATTGCTATTGAAGTCAAGGCAAGTGAATATGCATGGGAAACAGATAAAAACCATAAGAAACCAACAATTCAAATTACAGCAACTCTGAAGATAAAGAAGGGTCAAAAGGTTGCAATTTGTGGATTAGTAGGATCTGGGAAATCAAGCTTACTCTGCTGTATGCTTGGTGAGTTATCAAGGATTTCTGGGGAAGGAATGGAAATCAAGGGAAGTAGAAGTTATGTGCCCCAAAGTCCTTGGATTCAATCTGGGACTATAAGGGAAAATATTTTGTTTGGAAAGGAAATGAATAAGAACTTGTATGAGAAAGTTTTGGAAGGTTGTGCTTTGCACCAAGATATGAACATGTGGGTTGATGGAGATTTGACAATGGTGGGGGAGAGAGGCATAAACTTAAGTGGAGGACAAAAACAAAGGATTCAACTAGCAAGGGCTGTTTACAATAATTCAGATATTTATTTTCTGGATGATCCTTTCAGTGCTGTTGATGCACATACTGGAACACATTTGTTTAAGAAATGTCTAATGCAACTTCTATATGAGAAAACAGTTGTTTATGCTACCCATCAACTGGAATTCTTGGAAGCAGCTGATCTCATTGTAGTGATGAAAGATGGAAAAATTGTAGAGGCAGGAAAGTATAAAGATTTGATAGAACTTCCCAATTCTGAACTTGTTGAACAAATGGCTGCTCATAAAGAAACATTGAAGCAAATAAATCCATGCAAAGATGATGATTCTGTGAGCTGTAGATCCTACCAAACAAATCAGATTGAAGGTACTGAAAAAAATCTTCCAAAGACTTTCAAAGATTGCAAGCTTTTGGAGAAAACCAATGAAGAGGAAGTAGAGACTGGTCGAGTGAAATGGAATGTTTACTCATCCTTTGTTACATCAGCTTATAGAGGTGCACTTGTTCCCTTTGTTCTTCTGTGCCAAATTTTCTTTCAGGGATTGCAGATGGGAAGCAATTATTGGGTTGCTTGGGCCACAGAACAAAGGGGCAAGGTCAGTAATGGGCAGCTTATAGGGACATTTGTTCTACTATCCGGTGGCAGCTCCATCTTCATATTTGGAAGGGCTTTTTTAATGGCAAAAATTGCTGTAGAGACTGCTCAATGTCTTTTTCATGGAATGATAACTTCAATTTTCAGGGCGCCTATTTCATTTTTTGATACCACACCTTCAAGCCAAATCCTGAGTAGGTCTTCTACGGATCAAAGTACAATAGACACAGACATACCATACAGATTAGCTGGACTTGTATTTGCACTTATCCAGTTGGTGAGTATCATTGTCCTAATGTCCCAGGTTGCATGGCAAGTCATTCTCCTGTTTCTTGTTGTGCTTGCTATCTCCATCTGGTACCAGGCTTATTACATCACTAGTGCAAGGGAATTAGCCAGGATGGTAGGGATCCAAAAGACTCCAATTTTGCATCACTTCTCAGAATCAGTTGCAGGAGCTGCCACAATTCGTTGTTTCAATCAAGAGCAAAGATTTTTGGCTAAAGTTATGACTCTAATTGATGATTATTCTCGAGTAGCCTTTCATAATTATGCTACCATGGAATGGTTGTCTATCCGAATCAATTTTCTTTTTAATTTGGTCTTCTATTTTGTTCTCACCATCTTGGTTATTTTGCCAAGGTCTGCCATTGATCCTAGCTTGGCAGGATTGGTAGCTACTTATGGTTTGAACCTGAATATCCTACAGGGTTGGGTGATATGGAATCTTTGCAATGTTGAGAACAAAATGATCTCAGTTGAGAGAATATTACAGTTCACTAACATACCAAGTGAAGCACCCTTAATAATTCAAGATTGTAGGCCTGAGCCTGAGTGGCCTAGGGAGGGAAAAATTGAACTGCATAACCTTCATATACAGTATGATCCTGCTTCTCCTATGGTTCTCAAAGGTGTCACTTGCACCTTCTCAGGTCAAAAGAAAATTGGAGTTGTAGGCAGGACAGGAAGTGGGAAATCCACCTTAGTTCAAGCTCTCTTTCGAGTGGTGGAGCCTTCTGCAGGATGGATACTTATTGATGGTATAGACATTTGCAATATTGGTCTGCAGGACCTAAGATCTAAGCTTGGTATAATTCCTCAAGATCCAACCTTGTTTCAAGGCACTGTGAGGACTAACTTGGATCCTCTAGAACAACATTCAGATCAAGAACTTTGGGAGGTTCTCAGTAAGTGCCATCTGTCAGAAATAGTAAGGCAAGATGCAAGGCTTCTTGATGCACCGGTGGCCGAGAATGGTGAAAATTGGAGTGTGGGGCAAAGGCAGTTGGTTTGCCTTGCTAGGCTGCTGTTAAAGAAAAGAAGAATTTTGGTCTTAGATGAAGCAACTGCATCCATTGACACTACAACTGATAATTTAATTCAAAAGACTATTAGGGAAGAGACAAGTGGATGCACAGTCATTACCGTGGCACATAGAATTCCTACAGTTATTGATAATGACTTGGTTTTGGTCCTTGATCAAGGGAAGATTGTAGAGTATGATCGCCCAGCTCAATTGCTACAGAATAATTCTTCATCATTCTCAAAGTTGGTGTCAGAATTTTTGAGCAGATCATCCCAAAATAACTACCAAAAGAATACACAATAA 4368 0.3876 MAILDSLLGVINVAFFYTMLVWLLVHSLRESRRNCVLYLKGGCTRYAIFATSTVLSNVVISVFNIGFAIYEYSSRRIIGYYSVSLALTWVLATIVSLYSMKRIFKENQRWPLVLVLWWLFASILYTASVYLKLTKNFKSLNLWFFLLEDNIVDMVSFPLLLLLCFNALHTVFAWKWKPNDMEQLLLEKELPIPSSLEEDGETFTNANIWSKLTFLWLNHIFKRGRIQKLELPHIPSVPHSETAENASSMLEDSIGNQKLEGVSLTKVIVHSIWKSLVLNAIFAGVNTIASYMGPLLITNFVSFLLDKDDSSSNQYGLILAFIFFLLKMVESLSQRQWYFGAQQIGIRVRAALMVLIYKKSLSIKHAGKITNLINVDAERIGDFCWYSHGVWLLPVQVILALVILCRNLGYIPSIAAFVVTILVMIFNTPLANVQKSFHSKIMEAKDSRIKMTSETLKNIRILKMHSWESIFLKKLLHLRKMERGWLQKYLYTCSTVATLFWTSPTLVSAVTFGVCLLVKTELTAATVLSALATFRILQEPIYNLPELISIIAQTRVSVDRIQEFINQEDKTLFVISHALKSSSEIAIEVKASEYAWETDKNHKKPTIQITATLKIKKGQKVAICGLVGSGKSSLLCCMLGELSRISGEGMEIKGSRSYVPQSPWIQSGTIRENILFGKEMNKNLYEKVLEGCALHQDMNMWVDGDLTMVGERGINLSGGQKQRIQLARAVYNNSDIYFLDDPFSAVDAHTGTHLFKKCLMQLLYEKTVVYATHQLEFLEAADLIVVMKDGKIVEAGKYKDLIELPNSELVEQMAAHKETLKQINPCKDDDSVSCRSYQTNQIEGTEKNLPKTFKDCKLLEKTNEEEVETGRVKWNVYSSFVTSAYRGALVPFVLLCQIFFQGLQMGSNYWVAWATEQRGKVSNGQLIGTFVLLSGGSSIFIFGRAFLMAKIAVETAQCLFHGMITSIFRAPISFFDTTPSSQILSRSSTDQSTIDTDIPYRLAGLVFALIQLVSIIVLMSQVAWQVILLFLVVLAISIWYQAYYITSARELARMVGIQKTPILHHFSESVAGAATIRCFNQEQRFLAKVMTLIDDYSRVAFHNYATMEWLSIRINFLFNLVFYFVLTILVILPRSAIDPSLAGLVATYGLNLNILQGWVIWNLCNVENKMISVERILQFTNIPSEAPLIIQDCRPEPEWPREGKIELHNLHIQYDPASPMVLKGVTCTFSGQKKIGVVGRTGSGKSTLVQALFRVVEPSAGWILIDGIDICNIGLQDLRSKLGIIPQDPTLFQGTVRTNLDPLEQHSDQELWEVLSKCHLSEIVRQDARLLDAPVAENGENWSVGQRQLVCLARLLLKKRRILVLDEATASIDTTTDNLIQKTIREETSGCTVITVAHRIPTVIDNDLVLVLDQGKIVEYDRPAQLLQNNSSSFSKLVSEFLSRSSQNNYQKNTQ. 1456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01747 1455 SUPERFAMILY ABC transporter transmembrane region 891 1185 IPR036640 GO:0005524|GO:0016020
Seca6g01747 1455 SMART AAA_5 1231 1422 IPR003593 GO:0016887
Seca6g01747 1455 SMART AAA_5 617 791 IPR003593 GO:0016887
Seca6g01747 1455 CDD ABC_6TM_ABCC_D2 890 1180 IPR044726 GO:0140359
Seca6g01747 1455 Gene3D ABC transporter type 1, transmembrane domain 250 571 IPR036640 GO:0005524|GO:0016020
Seca6g01747 1455 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 589 814 IPR003439 GO:0005524
Seca6g01747 1455 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 892 1168 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g01747 1455 CDD ABC_6TM_ABCC_D1 278 561 IPR044746 GO:0140359
Seca6g01747 1455 CDD ABCC_MRP_domain1 587 791 - -
Seca6g01747 1455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1197 1431 IPR027417 -
Seca6g01747 1455 Gene3D ABC transporter type 1, transmembrane domain 853 1186 IPR036640 GO:0005524|GO:0016020
Seca6g01747 1455 FunFam ABC transporter C family member 10 260 569 - -
Seca6g01747 1455 Pfam ABC transporter 1222 1370 IPR003439 GO:0005524
Seca6g01747 1455 FunFam Multidrug resistance-associated protein 4 574 831 - -
Seca6g01747 1455 Pfam ABC transporter transmembrane region 910 1131 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g01747 1455 Pfam ABC transporter transmembrane region 277 540 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g01747 1455 Gene3D - 598 838 IPR027417 -
Seca6g01747 1455 Gene3D - 1188 1441 IPR027417 -
Seca6g01747 1455 FunFam ABC transporter C family member 5 855 1186 - -
Seca6g01747 1455 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 277 553 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g01747 1455 Pfam ABC transporter 612 743 IPR003439 GO:0005524
Seca6g01747 1455 CDD ABCC_MRP_domain2 1203 1423 - -
Seca6g01747 1455 ProSitePatterns ABC transporters family signature. 716 730 IPR017871 GO:0005524|GO:0016887
Seca6g01747 1455 FunFam ABC transporter C family member 3 1188 1440 - -
Seca6g01747 1455 SUPERFAMILY ABC transporter transmembrane region 272 568 IPR036640 GO:0005524|GO:0016020
Seca6g01747 1455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 610 804 IPR027417 -
Seca6g01747 1455 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1205 1439 IPR003439 GO:0005524
Seca6g01747 1455 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 204 1444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01747 Seca-Chr6 72340473 72346431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01747 587 833 Calmodulin-binding Proteins AT2G36910 28.309 5.06e-21 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01747 - - gmx:100809063 2132.84