Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01733 ATGGCGGCTGGTAGACATGGAGGTTATCGCGACAATGAGTTTAGGGACCGTGAGTCCAATTTCAATGTTTCAAGGCGGGTTTTTAACAATAATTCCAAAGAAGAGTATGGTATGATTAGTAATGGTAGCCACGATGTTGCGAGGAATGGGAGCAGGGATGCAAGAGATAGGATTAGACAGAGACACAGAGATATTAGGGAGAGAGAAGCTTCGAATGGCAGTTACCGATCTTCTTCCAGCAGGAGCGACTCCGGCAGCAGTGGCGGTAGCCGTAGTGGCAAGCTTGGTCCCAGAAAGTGTGGGTTTTCTATCAAGACTGTGGATAGAGAGCCAGGTGAGCTCTCTAGTGAGAGTGGCCCTGATGATGGTGTTGAATCAGAATCATTGATGAAAGTAAACGGGACTCTATCTTCGGTAGACAGGAAAAGAAAATTTTCACCAATAGTGTGGGATCAGGATGACAAAGAAGTGAATAATTTATCAAAACTTAGGGTTGCCGCAACAGTGACTGCTCTTCCTCCTGCACCTCCACTTCCAAAGGCATTCGGTAAATCACCTAATGTTCCTTGCAATGGATTTAAAGTTCATCCTGTCAAAAGCAGAGAAGCTGGGAATCTTAAGGAGCCGACTGCAGCTAGCCCTTCTTTGCTGTCTGAGTCAGTTCAGGATGCTGAATCTGAGTCTCCTGTAGGTTTGCATTCATTGTTTCCAGAGAAGAGGTGGGGTAATGAGCAGGAAGCTGAGCAACCAGAAGATGAAGATTATGTTCCAACTCATAACATATCATCTTCAAGATGGGCGTATGGAGATGACTCTCCTGGTGATGAAGGTGAAATCAATGATGACAAGGAAATCCTTAAAAGGAGGAGGAGACTATCTCCTGAGCTGGGTATGAGAGCGAGAGCCAAATCATCTGAATCGGAAGAAAGAGCTAGCCTAGGGAGATCATCCACTGGAGATGATCATCCAGGTATTGAGTCAGAGAAGGATGACTATATGGAGATTGATGGTCAAGGTTGCAAAAGTGATACTAGTGGTAATCCCTCATATACAGATTCTGAAGATGGAGATGATAGCAGTGAAACTCCAGAACCTCCAGCTCCGCCACACAGAGTTGTCAACATGCTTCAGGGCTGTAGAAGTGTTGATGAGTTTGAGAGACTGAACAAGATAGATGAAGGAACATACGGTGTTGTATATAGGGCCAGAGATAAGAAGACTGGAGAAATTGTGGCATTGAAAAAGGTAAAGATGGAGAAGGAGAAAGAAGGCTTTCCACTGACTTCTCTTAGGGAAATAAACATACTTCTTTCATTTCACCACCCATCCGTAGTTGATGTTAAGGAAGTAGTGGTAGGGAGTAACCTTGATAGTATTTTCATGGTTATGGAATACATGGAACACGATCTTAAAGGACTAATGGAGTCAATGAAGCAGCCATTTAGCCAAAGTGAAGTAAAATGCTTAATGCTTCAGCTTTTAGAAGGTGTGAAGTATCTTCATGACAACTGGGTGCTTCACAGGGATTTGAAGACTTCAAACCTTCTTCTGAATAATAGGGGTGAGTTAAAAATTTGTGATTTTGGATTGGCTCGTCAGTATGGGAGTCCATTGAAACCATATACACAATTGGTGGTTACTCTATGGTACAGGGCTCCTGAACTTCTTCTAGGGACAAAACAGTATTCAACCGCTATTGACATGTGGTCGCTGGGTTGTATAATGGCTGAGCTATTGTCCAAGGAACCACTATTTAATGGGAAGACTGAATTTGATCAACTTGACAAGATTTTCAGAATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCAGAATTACCTCGAGTCAAGGCTTTCAACTCTGGGTGGTTCTGGTCTGGCTATCTGGCCTCCTTGGTGACTTACTTTTACATGACTTTTCTAGTCTGTATTAACCAGCAGAATGTTCCTTTCAGGTATAATCTCCTGCGTAAAAAGTTTCCTGCAACATCATTCACTGGATCTCCAGTTCTTTCTGATTCTGGATTTGATTTGCTAAACAAGCTTCTTACTTATGACCCTGAAAAGAGGATCACAGCTGAAGATGCTCTCAATCATGAGTGGTTTCGTGAAGTTCCCCTTCCCAAGTCTAAAGAATTCATGCCCACGTTCCCTGCTCAACATGCACAAGACAGGCGGACGCGGAGAATATTGAAGAGTCCACATCCATTAGAGGAGCAAGTCCGGAAGGAGTTGCTGCAGGGCGAACCAGGGGCTGGTGGTATTTTTGGTTAA 2280 0.4368 MAAGRHGGYRDNEFRDRESNFNVSRRVFNNNSKEEYGMISNGSHDVARNGSRDARDRIRQRHRDIREREASNGSYRSSSSRSDSGSSGGSRSGKLGPRKCGFSIKTVDREPGELSSESGPDDGVESESLMKVNGTLSSVDRKRKFSPIVWDQDDKEVNNLSKLRVAATVTALPPAPPLPKAFGKSPNVPCNGFKVHPVKSREAGNLKEPTAASPSLLSESVQDAESESPVGLHSLFPEKRWGNEQEAEQPEDEDYVPTHNISSSRWAYGDDSPGDEGEINDDKEILKRRRRLSPELGMRARAKSSESEERASLGRSSTGDDHPGIESEKDDYMEIDGQGCKSDTSGNPSYTDSEDGDDSSETPEPPAPPHRVVNMLQGCRSVDEFERLNKIDEGTYGVVYRARDKKTGEIVALKKVKMEKEKEGFPLTSLREINILLSFHHPSVVDVKEVVVGSNLDSIFMVMEYMEHDLKGLMESMKQPFSQSEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTQLVVTLWYRAPELLLGTKQYSTAIDMWSLGCIMAELLSKEPLFNGKTEFDQLDKIFRILGTPNETIWPGFSELPRVKAFNSGWFWSGYLASLVTYFYMTFLVCINQQNVPFRYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEDALNHEWFREVPLPKSKEFMPTFPAQHAQDRRTRRILKSPHPLEEQVRKELLQGEPGAGGIFG. 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01733 759 FunFam cyclin-dependent kinase G-2 isoform X1 370 467 - -
Seca6g01733 759 MobiDBLite consensus disorder prediction 8 22 - -
Seca6g01733 759 SMART serkin_6 385 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01733 759 Pfam Protein kinase domain 385 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01733 759 MobiDBLite consensus disorder prediction 72 91 - -
Seca6g01733 759 MobiDBLite consensus disorder prediction 23 38 - -
Seca6g01733 759 MobiDBLite consensus disorder prediction 48 71 - -
Seca6g01733 759 ProSiteProfiles Protein kinase domain profile. 385 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01733 759 SUPERFAMILY Protein kinase-like (PK-like) 377 710 IPR011009 -
Seca6g01733 759 PANTHER CELL DIVISION PROTEIN KINASE 383 710 - -
Seca6g01733 759 Gene3D Phosphorylase Kinase; domain 1 370 467 - -
Seca6g01733 759 MobiDBLite consensus disorder prediction 279 337 - -
Seca6g01733 759 FunFam Cyclin-dependent kinase G-2 468 735 - -
Seca6g01733 759 MobiDBLite consensus disorder prediction 211 227 - -
Seca6g01733 759 ProSitePatterns Serine/Threonine protein kinases active-site signature. 505 517 IPR008271 GO:0004672|GO:0006468
Seca6g01733 759 Gene3D Transferase(Phosphotransferase) domain 1 468 735 - -
Seca6g01733 759 MobiDBLite consensus disorder prediction 199 371 - -
Seca6g01733 759 MobiDBLite consensus disorder prediction 1 145 - -
Seca6g01733 759 CDD STKc_CDC2L1 379 704 IPR045267 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01733 Seca-Chr6 72003871 72007288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01733 376 752 Core Cell Cycle Gene Families AT5G10270 41.837 2.42e-93 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Seca6g01733 Pkinase 6e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01733 K08818 - gmx:100793729 1049.27