Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01730 ATGAACCATGACTCTAAAAAAGTCGGACTACTCGTATTTTTTTTTTTTTTATCCATCTCCATGCAGGCCTTATCGAGACTCTGCACTGCAACTCCGCCGCACACTCCCAACCTATACGACGACGTCTATCGTCTTGAGCTTCCTCTTCAGCACTGCAACACTCTCTCGCCAACGCCAAGTTCAGTTCCAACATTTGTGAGCGTAATGAGAAGACCGAAATCGAAGGACTTTAAGAAGCAACACCGAGCCTCAGAAGAAGAGGAGATAAAGCTCTTGGATGCATGGATCCAAAGCCAGAAACCAGACTCTGGTTCGAACCCAATATCTCTTCCTCCTCTCCCCAAAAACTCCCCCATTGGGCGTCTCGACGATGGCACCTTCTCGCGCTACGCTGGTGTCAAGAGCTTCGTCCACTTACCCCTCTCCAAGAGAACCAAAGATGGCTTGCGAGAAGCCAAGTTCGTTTCTATGACCGACATACAGAGAGCTTCTCTTCCTCACGCGCTTTGTGGCCGTGACATTCTCGGCGCCGCCAAAACTGGCTCCGGCAAAACCCTCGCTTTCACTATCCCTGTGTTGGAGAAGTTATATAGAGAGAGATGGGGACCTGAAGATGGGGTTGGCAGCATCATCATATCACCTACCAGAGAATTAGCTGGTCAGATATTTGATGTGTTGAAGTGTGTTGGGAAGTACCATGGTTTTAGTGCTGGCCTCCTCATTGGTGGTCGCAAGGATGTTGACATGGAGAAAGAACGTGTCAATGAACTCAACATATTGATTTGCACACCCGGTCGCCTTCTACAACACATGGATGAAACTCCCAATTTTGATTGTTCACAGATGCAGGTTTTGGTATTAGATGAGGCTGATCGTATTCTTGATAGTGGATTCAAGAAGGAACTAAATGCAATCATCTCACAACTACCAAAGCGCAGACAAACCATGCTCTTCTCAGCAACTCAAACAAAGTCGATTCAAGATCTTGCAAGACTAAGTTTGAAGGACCCTGAGTATCTGAGTGTGCATGAAGAGTCTGTGACTGCCACTCCTACTCTCTTGAAGCAAATTGTGATGATTGTTCCCCTGGATCAAAAGCTAGATATGCTGTGGAGTTTCATAAAGACACATCTACAGTCAAAAACAATTGTCTTTCTTTCAAGCTGTAAACAGGTAAAATTTGTCTTTGAAGCATTTAAGAAACTGCACCCTGGCATACCATTGAAGTGCCTTCATGGGAGGATGAAACAGGAAAGAAGAATGGCAATATATTCTGAGTTTTGTGAGAAACTCTCAGTTCTCTTCTCAACTGATGTGGCTGCAAGAGGACTTGATTTTAATAAGGCAGTTGACTGGGTTGTTCAGGCAATTTGTCCTTATGATCAGAGTCTCATATTTCACTTACATCTGCAGGTGGATTGTCCTGAAAATGTAGCATCTTATATACATAGAGTTGGCCGTACTGCTCGTTATAAATCTGGTGGAAAGTCAGTTTTATTTCTGCTGCCCTCAGAAATTCAAATGCTTGAAAGGTTAAAAACAGCAAAGGTTCCAGTGCATTTTAATAAGCCAAGGAAAGAACTACTGCAACCAGTTTCTGGTCTGTTGGCATCTTTACTTGTCAAGTTCCCAGACCTGCAGCATCGGGCTCAAAGGGCGTTTGTCACATATTTGAGATCCATTCATATCCAAAAGGATAAAGAGATCTTTGATGTTATGAAACTACCTATTGATGAGTATTCAGCATCATTAGGTTTGCCAATGACTCCCAAAATCCGTTTTCTCAACCAGAAAATTAAATCTAAAGCTGTGTCAACAGAATTAGTTTTAGTTGAACCAGAGGTTTCAAACAAGGAAAATGTCTTGGAGGTTTCGAGAAAGAAGCTAGACTCTGTTGTTTTCAAAGATGAGGAAACTGAAAACGATCTTCTTCAGGAAGCTGATACCTCAAATGAAGGCGAAATGAAGTCATCTGATATTGGAGAAATAATGCCAGCAACTCGGTTATTGAAGAAGAAGAAGCTCAAGATTAATGTACATAGACCATTGGGGACTCGGGTTGTATTTGATGATGAAGGCAACACACTTCCTCCGCTAGCCAGGATTGCTGACACACAAAGTGGCAAGGAAACGTTGCTACTTGACCCAGAACAAAAAGCTGAATACTACAAAAGGATGCGAGAGGATTTGAAGAAGGCAGACAAGGAAGACAAGCTTTTAGAGCGCCAGCGTCGAAGAGAAAAAAGAATCAAGCAGAAGATGAAGTGGAAGGCAGGGAATGTTGGAGAAGAGGATGACCAAGTTGATACTTCTGGGTCAGAAGGTGACGAAACTGTAAATAGACGGCATAAAAAGAATAAAGTATACTTTGATAGTGACAGTGATGAGGGTGAAAGAAATGAAGTCACACGGAATGCAGGAATTAGTGCTGGCTCCATTACTTTAGAGGAGCAAGAAGCGCTGGCTTTGAAATTGTTAAATTCCATGCATTCATAG 2496 0.4299 MNHDSKKVGLLVFFFFLSISMQALSRLCTATPPHTPNLYDDVYRLELPLQHCNTLSPTPSSVPTFVSVMRRPKSKDFKKQHRASEEEEIKLLDAWIQSQKPDSGSNPISLPPLPKNSPIGRLDDGTFSRYAGVKSFVHLPLSKRTKDGLREAKFVSMTDIQRASLPHALCGRDILGAAKTGSGKTLAFTIPVLEKLYRERWGPEDGVGSIIISPTRELAGQIFDVLKCVGKYHGFSAGLLIGGRKDVDMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKELNAIISQLPKRRQTMLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLDMLWSFIKTHLQSKTIVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKLSVLFSTDVAARGLDFNKAVDWVVQAICPYDQSLIFHLHLQVDCPENVASYIHRVGRTARYKSGGKSVLFLLPSEIQMLERLKTAKVPVHFNKPRKELLQPVSGLLASLLVKFPDLQHRAQRAFVTYLRSIHIQKDKEIFDVMKLPIDEYSASLGLPMTPKIRFLNQKIKSKAVSTELVLVEPEVSNKENVLEVSRKKLDSVVFKDEETENDLLQEADTSNEGEMKSSDIGEIMPATRLLKKKKLKINVHRPLGTRVVFDDEGNTLPPLARIADTQSGKETLLLDPEQKAEYYKRMREDLKKADKEDKLLERQRRREKRIKQKMKWKAGNVGEEDDQVDTSGSEGDETVNRRHKKNKVYFDSDSDEGERNEVTRNAGISAGSITLEEQEALALKLLNSMHS. 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01730 831 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 286 294 IPR000629 -
Seca6g01730 831 SMART ultradead3 153 357 IPR014001 -
Seca6g01730 831 MobiDBLite consensus disorder prediction 734 805 - -
Seca6g01730 831 Gene3D - 124 346 IPR027417 -
Seca6g01730 831 SMART helicmild6 393 492 IPR001650 -
Seca6g01730 831 Pfam DEAD/DEAH box helicase 158 328 IPR011545 GO:0003676|GO:0005524
Seca6g01730 831 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 362 540 IPR001650 -
Seca6g01730 831 MobiDBLite consensus disorder prediction 775 802 - -
Seca6g01730 831 Pfam Domain of unknown function (DUF4217) 536 592 IPR025313 -
Seca6g01730 831 Gene3D - 351 657 IPR027417 -
Seca6g01730 831 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 281 508 IPR027417 -
Seca6g01730 831 CDD DEADc_DDX10 145 343 - -
Seca6g01730 831 CDD SF2_C_DEAD 354 501 - -
Seca6g01730 831 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 165 340 IPR014001 -
Seca6g01730 831 Coils Coil 723 743 - -
Seca6g01730 831 Pfam Helicase conserved C-terminal domain 366 491 IPR001650 -
Seca6g01730 831 SMART DUF4217_3 531 594 IPR025313 -
Seca6g01730 831 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 134 162 IPR014014 GO:0003724
Seca6g01730 831 PANTHER RNA HELICASE 95 658 - -
Seca6g01730 831 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 342 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01730 Seca-Chr6 71990095 71995286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01730 133 509 Eukaryotic Initiation Factors Gene Family AT3G19760 27.225 2.61e-33 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01730 K14776 - gmx:100792106 1263.06