Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01728 ATGATGATGTTGGTGAATTCTGGCACAGGACTTAAGAAACAGGTTTTTCCCATTAGCTACGAAACGGAAATGTCACAGCGTCTCGTAGAAGCTTCTCATCGCGGTGACACAGAAACTGCCTTTGAATGTCTCGCGAGTCCCTTGGTGGACGTGAACTTCGTCGGAACGGTGTCGTTGAAGTCCAAAACGATGGAGATCGTGCTGCAAGACGAGTCACCTCACCGAGTTCAATCGGTGTATGAGGAGTTCAAGACAGAGGTCACTGCTCTGTTCTTGGCTGCGCATTCTGGGAATTTGACACTCCTCCGGAAGCTACTGAATGTCGGAGCTAATGTAAATATGAGATTGTTCCGGGGATATGCCATAACAGCAGCAGTGAGGGAAGGTCATCTAAAAATATTGGAGGTCCTTATCAATTCTGGGGCATCACAGCTTGCATGCGAGGAGGCTTTAATGGAAGCAAGCTATGTGGGACGGGCCAGATTTGCTGAACTACTCATGCGGTCCAACATGATCCGTCCTCAGGTTGCAATTCATGCCCTTGTCTCTGCCTGTTGCAGAGGCTTTATTGAGGTTGTTGATGTACTCCTCAAGTATGGAGTGGATGCCAATGCAATTGATAGGACGCTGCTTCAATCTTCAAAGCCATTTCTTCACGCTAATGTTGATTGCAGTGCATTATTCGCTGCTGTTGTCAGCAGGCAGATTAATGTTGTTAGATTACTGTTGCAGGTTGGTGTTAGAGTAGATATCAAGGTCAATCTAGGGGCTTGGTCATGGGAGACGGATACAGGAGAAGAATTTCGTGTGGGTGTTGGACTAGCTGAGGCTTATCCAATCACCTGGTGTGCTGTGGAGTATTTTGAATCCAGTGGTGCTATATTGCATATGCTGCTTTGTCACCTCCCGCCTAATACTTTGCACATTGGGAGGACTCTCTTGCACCATGCCATCGTTTGTAACAATGAAAAAGCATTAAATATACTTTTAAATAGTGGTGCAGATGCGGAAGCGGTAGTGCAAACTACTGAAGAAACCAATGTACACCCTATTCATATGGCTGCAAGGCTTGGATCATGCAACATTCTTCAGTGCCTGATTAATGGTGGTTGTAGCTTGGACTCCCAAACAAAATCTGGAGATACAGCATTGATGATCTGCACAAGGTATAAACATGAGAGGTGCCTTAGAGTCCTAGTATCAGCAGGTGCAGATTTGGGGTTGGTAAATTCATCTGGTCATTGTGCAACTTCAATCTCAAACTCTGTTCAGTGGACTAAAGTATTCCAGACAGCAATTTTAGATGCAATAAGAGCCGAAAAGGAAGTTAAATCAAGCAATGCCTCTAGATTTTCTGCTTTGTTATTTGTGACTCGTTCAAATGACACAGAGGGACTGAAGAAACTCATTGAAAACAAGAACGTAGATCTTGATGAGCAAAATGGCAATGGATTTTCAGCTGCCATGATTGCTGTGGCAGGGGGTAACGTGGAGACTTTCAGGTTGCTTCTCTATGCTGGGGCTGATGTAACCAAGCTTAAAAACAAGTATGGTTTGACAGCCCTTAACCTCATAGACGCCAGCCAAAATGGGGAAGCATTTTACAAGGTAATGCTTGAATATGCACTTAACAACGGATGCGATGGTTCAATTGAGGTGAACCCTCTCCACCGTGCAACTCGCTATGGGGACATGGACATTGTTCATAAATTATTGAAAGAAGGGTATGATGTCAATGCTTTTGATGGAGATGGATATACCCCATTGATGTTAGCTGCAAGAGGATGCCTTGGTGAAATGTGTGAGCTTTTGATCTCATGTGGAGCCAAATGTGATATTCAGAATGAGAGACATGAGACAGCACTTTCACTTGCCAGAGAAAATGGTACAGGAAATTATGCAGAGCGTGTGATATTGGATGAGCTAGCTCGAAGAGTAGTCTTGTGTGGGGCTTGTGTAAAGAAACATACCAAGTGTGGTAAAGGGTCACCTCACAGTAAGCAACTGGTAATGGTGGGGGCTGCTGGAATTTTACGTTGGGGAAAATCAGATAAGAGAAACGTGGTTTGCAAAGAAGCTGAGGTTGGACCAAGTGCAAAATTTCGATGGAATCGCCGGAAGAAGTTTGATGTTGATGAGCCAGGAATGTTTCATGTAGTCACTACAAAAAATAAGCAGGTGCATTTTGTATGTGAAGGTGGGGTTGAAATGGCTGAGTTGTGGGTAAGGGGTATTAAATTAGTAACAAGAGAAGCCATTTTTGGCCAAAGAACTGATAACGTCTGA 2286 0.4423 MMMLVNSGTGLKKQVFPISYETEMSQRLVEASHRGDTETAFECLASPLVDVNFVGTVSLKSKTMEIVLQDESPHRVQSVYEEFKTEVTALFLAAHSGNLTLLRKLLNVGANVNMRLFRGYAITAAVREGHLKILEVLINSGASQLACEEALMEASYVGRARFAELLMRSNMIRPQVAIHALVSACCRGFIEVVDVLLKYGVDANAIDRTLLQSSKPFLHANVDCSALFAAVVSRQINVVRLLLQVGVRVDIKVNLGAWSWETDTGEEFRVGVGLAEAYPITWCAVEYFESSGAILHMLLCHLPPNTLHIGRTLLHHAIVCNNEKALNILLNSGADAEAVVQTTEETNVHPIHMAARLGSCNILQCLINGGCSLDSQTKSGDTALMICTRYKHERCLRVLVSAGADLGLVNSSGHCATSISNSVQWTKVFQTAILDAIRAEKEVKSSNASRFSALLFVTRSNDTEGLKKLIENKNVDLDEQNGNGFSAAMIAVAGGNVETFRLLLYAGADVTKLKNKYGLTALNLIDASQNGEAFYKVMLEYALNNGCDGSIEVNPLHRATRYGDMDIVHKLLKEGYDVNAFDGDGYTPLMLAARGCLGEMCELLISCGAKCDIQNERHETALSLARENGTGNYAERVILDELARRVVLCGACVKKHTKCGKGSPHSKQLVMVGAAGILRWGKSDKRNVVCKEAEVGPSAKFRWNRRKKFDVDEPGMFHVVTTKNKQVHFVCEGGVEMAELWVRGIKLVTREAIFGQRTDNV. 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01728 761 SUPERFAMILY Ankyrin repeat 31 256 IPR036770 -
Seca6g01728 761 Gene3D - 434 538 IPR036770 -
Seca6g01728 761 Gene3D - 178 262 IPR036770 -
Seca6g01728 761 Gene3D - 305 433 IPR036770 -
Seca6g01728 761 Gene3D - 18 177 IPR036770 -
Seca6g01728 761 ProSiteProfiles Ankyrin repeat region circular profile. 309 338 - -
Seca6g01728 761 Pfam Ankyrin repeats (many copies) 460 504 IPR002110 GO:0005515
Seca6g01728 761 PANTHER ANKYRIN REPEAT-CONTAINING 21 742 - -
Seca6g01728 761 SMART ANK_2a 379 408 IPR002110 GO:0005515
Seca6g01728 761 SMART ANK_2a 117 146 IPR002110 GO:0005515
Seca6g01728 761 SMART ANK_2a 346 375 IPR002110 GO:0005515
Seca6g01728 761 SMART ANK_2a 309 338 IPR002110 GO:0005515
Seca6g01728 761 SMART ANK_2a 584 613 IPR002110 GO:0005515
Seca6g01728 761 SMART ANK_2a 551 580 IPR002110 GO:0005515
Seca6g01728 761 SMART ANK_2a 85 114 IPR002110 GO:0005515
Seca6g01728 761 SMART ANK_2a 222 251 IPR002110 GO:0005515
Seca6g01728 761 SMART ANK_2a 449 479 IPR002110 GO:0005515
Seca6g01728 761 SMART ANK_2a 483 512 IPR002110 GO:0005515
Seca6g01728 761 SMART ANK_2a 176 205 IPR002110 GO:0005515
Seca6g01728 761 ProSiteProfiles Ankyrin repeat profile. 483 515 IPR002110 GO:0005515
Seca6g01728 761 Pfam Ankyrin repeats (3 copies) 525 615 IPR002110 GO:0005515
Seca6g01728 761 Pfam Ankyrin repeats (3 copies) 349 408 IPR002110 GO:0005515
Seca6g01728 761 Gene3D - 539 644 IPR036770 -
Seca6g01728 761 ProSiteProfiles Ankyrin repeat region circular profile. 551 582 - -
Seca6g01728 761 ProSiteProfiles Ankyrin repeat profile. 584 616 IPR002110 GO:0005515
Seca6g01728 761 ProSiteProfiles Ankyrin repeat region circular profile. 483 510 - -
Seca6g01728 761 ProSiteProfiles Ankyrin repeat region circular profile. 85 115 - -
Seca6g01728 761 ProSiteProfiles Ankyrin repeat profile. 346 378 IPR002110 GO:0005515
Seca6g01728 761 ProSiteProfiles Ankyrin repeat profile. 379 411 IPR002110 GO:0005515
Seca6g01728 761 SUPERFAMILY Ankyrin repeat 310 637 IPR036770 -
Seca6g01728 761 ProSiteProfiles Ankyrin repeat region circular profile. 584 616 - -
Seca6g01728 761 ProSiteProfiles Ankyrin repeat profile. 551 583 IPR002110 GO:0005515
Seca6g01728 761 ProSiteProfiles Ankyrin repeat profile. 85 117 IPR002110 GO:0005515
Seca6g01728 761 ProSiteProfiles Ankyrin repeat profile. 309 341 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01728 Seca-Chr6 71938680 71944389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01728 353 532 Ion Channels AT2G25600 30.055 2.11e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01728 - - gmx:100795638 1313.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01728 6 71938680 71944389 Seca6g01728 6 71938680 71944389 ECH