Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01715 ATGGATGTTGCTGAGGTTGAAGAAAATTTGTTTGCAGCCAGTGATGCAAAGTTACATGGAGAAATGTGCAAGGATCTTTCTGCAATATATTGCAAAATATTGTCTATATTTCCTTGTTTAGAAGCAGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGTTCATTGCATGTAGCCTTAGAGAAGGCGAAGAATGTTCTTCAACACTGCTCAGAGTGTAGCAAACTTTACTTGGCTATAACTGGGGATGCCGTTCTTCTAAAATTTGAGAAGGCTAAATGTGCTCTTATAGATAGTCTTAAGCTGGTGGAAGATATTGTTCCTCAATCTATTGGGTGTCAGATTGATGAAATTGTCAATGAACTTGCTAGTATGGCATTTGCACTTGACCCATCAGAGAAGCAAGTCGGGGATGATTTAATTGCATTGCTTCAGCAGGGGAGAAAGTTTAATGACTCTAATGACAATAATGAACTTGAGTGTTTTCATCTAGCTGCTACTAGACTTGGAATCACATCTTCGAGAGCAGCTCTTACTGAACGAAGAGCTCTAAAAAAACTCATTGAAAGAGCTCGAGCTGAGGAAGACAAGCGGAAGGAATCAATTATTGCATATCTTTTTCACCTCATGAGGAAATACTCGAAGTTATTTAGAAGTGAGTTCTCTGATGATAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCATAGATCTCTTGAGGACTTTGTTCCTGGTGGTCATTGTCAGGCCTTCGATAGACAGCTTTCAAAGCTTAGTTCCTTTAATTTCAAGCCAAATAATAGGAGATCAGGGCAGATGCCCCTTCCACCTGAAGAGTTAAGGTGTCCGATATCCCTGCAGCTTATGAGTGATCCTGTAATAATTGCTTCTGGGCAAACATATGAAAGGTTATGTATAGAAAAATGGTTCAGTGATGGGCACAACACCTGCCCAAAGACTCAACAGAAACTTGATCATCTTAATTTGACTCCTAATTACAGTGTTAAGGGTCTTGTGGCTAGTTGGTGTGAACAGAATGGAATTCCTATTCCTGAAGGTCCTCCTGAATCTCTTGATTTCAACTACTGGAGATTGGCATTATCAGATTCTGAATCCACAAATTCAAGATCTGTAAACAGTGTCAACTCTTGCAAATTAAAGGGTGTCAAAGTTGTTCCTCTAGAAGAGAGTGGTATCTCAGAGCAAACTGGGGGGAATGCAGCTGAAAGTTTGTCAGGACAAGAGGAAGACAATGAGCAGTATTTTAGTTTTCTGAAAGTATTGACTGAAGTGAATAATTGGAAGAGGAAGTGTAAAGTGGTAGAACGTTTAAGGCTGCTACTGCGGGATGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGATTTGTTGAAGCACTTATGCAGTTTCTGCAATCAGCTGTGCGTGAAGGGAATGTGATGGCTCAGGAAAGTGGAGCTATGGCTCTGTTCAACCTGGCTGTGAATAACAACAGAAATAAGGAAATTATGATATCAGCAGGAATTTTATCCTTGTTGGAGGGAATGATTTCAGACACAAGTTCATATGGTTGTGCAACCGCCCTGTATCTGAACCTTTCTTGCCTTGAAGAAGCCAAGCAGATCATTGGCACGAGTCCTCAGGCTGTCCAGTTCCTAATCCAGATTCTTCAAGCTAAAACTGAAGTCCAGTGCAAGCTAGATTCCCTCCATGCCCTCTATAATCTTTCTACTGTGCCCCCCAACATTCCAAACCTCCTTTCATGTGGCATCATTAATGGCCTACAATCCCTTCTTGTAGGCCAGGATGATTGCATGTGGATAGAAAAATGCATAGCTGTTTTGATAAATTTAGCTGTTTCCCAAGTGGGAAGAGAGGAAATTATGTTGACTCCTGGACTCATAGGCGCATTGGCTTCGATACTGGACACCGGTGAGCTCCTAGAGCAGGAGCAAGCTGTCTCTTGTCTCCTAATTTTATGTAACAGGAGTGAGAAGTGTTGTGAGATGGTCCTGCAAGAAGGGGTTATACCTGCATTGGTGTCAATATCAGTAAATGGAACATCAAGAGGAAGAGAAAAAGCTCAGAAACTCTTGATGCTCTTCCGAGAGCAGCGACAGCGAGAACGGGACCAATCACCGGCTAAGACAATTCAATGCCAGCCTGAAACTAGTGATTTGTCCAAGCCTCCTCCTGAAACAAAACCTCTATGTAAAACAACATCTAGAAAAAAGGTGGGGAAAGCTTTTAGCTTTCTCTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAA 2304 0.4175 MDVAEVEENLFAASDAKLHGEMCKDLSAIYCKILSIFPCLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDAVLLKFEKAKCALIDSLKLVEDIVPQSIGCQIDEIVNELASMAFALDPSEKQVGDDLIALLQQGRKFNDSNDNNELECFHLAATRLGITSSRAALTERRALKKLIERARAEEDKRKESIIAYLFHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVHRSLEDFVPGGHCQAFDRQLSKLSSFNFKPNNRRSGQMPLPPEELRCPISLQLMSDPVIIASGQTYERLCIEKWFSDGHNTCPKTQQKLDHLNLTPNYSVKGLVASWCEQNGIPIPEGPPESLDFNYWRLALSDSESTNSRSVNSVNSCKLKGVKVVPLEESGISEQTGGNAAESLSGQEEDNEQYFSFLKVLTEVNNWKRKCKVVERLRLLLRDDEEARIFMGANGFVEALMQFLQSAVREGNVMAQESGAMALFNLAVNNNRNKEIMISAGILSLLEGMISDTSSYGCATALYLNLSCLEEAKQIIGTSPQAVQFLIQILQAKTEVQCKLDSLHALYNLSTVPPNIPNLLSCGIINGLQSLLVGQDDCMWIEKCIAVLINLAVSQVGREEIMLTPGLIGALASILDTGELLEQEQAVSCLLILCNRSEKCCEMVLQEGVIPALVSISVNGTSRGREKAQKLLMLFREQRQRERDQSPAKTIQCQPETSDLSKPPPETKPLCKTTSRKKVGKAFSFLWKSKSYSVYQC. 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01715 767 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Seca6g01715 767 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Seca6g01715 767 MobiDBLite consensus disorder prediction 717 731 - -
Seca6g01715 767 SUPERFAMILY RING/U-box 277 354 - -
Seca6g01715 767 Gene3D - 427 529 IPR011989 -
Seca6g01715 767 Gene3D - 530 709 IPR011989 -
Seca6g01715 767 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Seca6g01715 767 CDD RING-Ubox_PUB 280 332 IPR045210 -
Seca6g01715 767 PANTHER U BOX DOMAIN-CONTAINING 21 710 - -
Seca6g01715 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 352 IPR013083 -
Seca6g01715 767 MobiDBLite consensus disorder prediction 708 743 - -
Seca6g01715 767 Coils Coil 175 195 - -
Seca6g01715 767 SUPERFAMILY ARM repeat 426 708 IPR016024 -
Seca6g01715 767 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Seca6g01715 767 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Seca6g01715 767 Coils Coil 695 715 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01715 Seca-Chr6 71804217 71809307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01715 1 766 U-box Gene Family AT1G24330 66.239 0.0 1029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01715 - - gmx:100804344 1286.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01715 6 71804217 71809307 Seca6g01715 6 71804217 71809307 ECH
Seca6g01715 6 71804217 71809307 Seca12g05694 12 148511596 148517120 PCT