Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01695 ATGCATATCTTGTCTAAAATGGAAGAAATGGGCATTCGGTCTGCCATTGTATTTACCAACACACGCAGAGATTGTCATTGTTTAAGTTTAATGCTGGAAGTGCTTGATCAAGAAGCTGCAGCTCTATATTCATACAAAACTCAGGTTCAGAGGCTCGAGGCACTCAATCAATTTAAATCAGGAAAGGTTTCTGTACTACTTACAACTGATGTTGCCTGCTGTGGTTTGGATATTCCTACAGTTGACCTTGTTATCAATTATGATGTTCCAAGCATTCCACGAAATTATATTCATCGTGTAGGTCGTACTGCAAGAGCGGGTAGAGGAGGACTGGCTTTGAGCCTCGTCACCCAGAATGATGTTGATCTCATTCATGAAATAGAGACTCTTATTGAAAGGCAACTTGAAATGATTGAATACAAAGAAAATGAGGTGCTTTCTCTCATGAAAAAGGTTTTCAGTGCTAAGAATGTAGCAGAAATGAAGATGATGGGTTTGAGGAGAAAGGAAAAAAGCGGAAAAAACAAAAACTGA 534 0.3895 MHILSKMEEMGIRSAIVFTNTRRDCHCLSLMLEVLDQEAAALYSYKTQVQRLEALNQFKSGKVSVLLTTDVACCGLDIPTVDLVINYDVPSIPRNYIHRVGRTARAGRGGLALSLVTQNDVDLIHEIETLIERQLEMIEYKENEVLSLMKKVFSAKNVAEMKMMGLRRKEKSGKNKN. 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01695 177 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 145 IPR027417 -
Seca6g01695 177 Pfam Helicase conserved C-terminal domain 11 107 IPR001650 -
Seca6g01695 177 CDD SF2_C_DEAD 3 116 - -
Seca6g01695 177 Gene3D - 1 176 IPR027417 -
Seca6g01695 177 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 14 152 - -
Seca6g01695 177 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 6 146 IPR001650 -
Seca6g01695 177 SMART helicmild6 26 107 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01695 Seca-Chr6 71415115 71419956 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01695 8 136 Eukaryotic Initiation Factors Gene Family AT3G19760 35.659 4.50e-24 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01695 K14778 - gmx:100798597 266.929