Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01694 ATGGAGCAGCCACAGCTCTTAGTGGACGAAAACTTCCCTCTCTTCAAATCAACCAGCAAACCCTCAAAAAACCCCTCACCCTCCGCCATCAACAACAACAATCCTAACTCCGATGCCAAACACCCTAATTTTGATGCTGAAAACTTCAAAGACACTGCCCCAGCCACGACGTTCGCTGATCTTGGACTTGCAGAATGGGCGGTGCAGACATGCAAGGCGCTCAGAATGCAGGTGCCGTGGCGCGTGCAGTGGCAGTGCATCCCAAGGGTCCTGGAGGGCCGCCACGTACTCTGCATCGACGAGACGGGCAGCGGCAAAACGGCGGCATTTGCCCTCCCCATCCTGCATCGCCTCGCTGAGCACCCGTTTGGCGTGTTCGCCCTTGTGGTGACTCCCACGCGCGAGCTTGCCTTCCAGCTTGCCGAGCAGTTCCGCGCCCTCGGCTCCTCCATCTGCCTCCGCATCGCCGTGGTGGTTGGCGGGATGGACATGCTCAAACAGGCCAGGGACTTGATCGACAGGCCTCACATTGTCATCGCCACCCCCGGGAGAGTCAAGCTCTTGCTTGAGGATAATCCTGATATCCCTCCTATTTTCTCTAGGATTAAGTTCGTTATCTAG 621 0.57 MEQPQLLVDENFPLFKSTSKPSKNPSPSAINNNNPNSDAKHPNFDAENFKDTAPATTFADLGLAEWAVQTCKALRMQVPWRVQWQCIPRVLEGRHVLCIDETGSGKTAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSSICLRIAVVVGGMDMLKQARDLIDRPHIVIATPGRVKLLLEDNPDIPPIFSRIKFVI. 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01694 206 MobiDBLite consensus disorder prediction 1 47 - -
Seca6g01694 206 SMART ultradead3 75 205 IPR014001 -
Seca6g01694 206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 206 IPR027417 -
Seca6g01694 206 MobiDBLite consensus disorder prediction 15 41 - -
Seca6g01694 206 Pfam DEAD/DEAH box helicase 81 205 IPR011545 GO:0003676|GO:0005524
Seca6g01694 206 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 87 206 IPR014001 -
Seca6g01694 206 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 21 190 - -
Seca6g01694 206 Gene3D - 22 206 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01694 Seca-Chr6 71412991 71414871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01694 79 185 Eukaryotic Initiation Factors Gene Family AT5G11200 40.000 5.76e-18 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01694 K14778 - gmx:100804060 264.233