Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01689 ATGGCGGAGGAAGAAGAGAACGTGTCGTCCAGATCCGAATTCCCGAGGGGTCGGGTGAAGAAGATAATGACTCTGGACAAGGACGTGCAGAGGGTGAGCTCAGAAGCGTTGTTTCTGGTGTCGCGCTCCACGGAGCTTTTCCTCCAATTACTGGCTGAAAAGTCTGCGGAGGTTGCTATTGAGAAGAAACGCAAGACCGTGAAGCTTGAACACATAAGAACCGCCGTGAAAAAGCACCAGCCAACCAGGGATTTCCTCCTCGATTCGCTTCCAATGCCTTCTCAGCCAGCCAAACCTGATAAGCCTGCTCTGGCGGCGGATCGGGTCAAATCCGCTCCGTCTGGTACTCGCCGCATTGATCATTTCTTCCGAAAGCCAGAAGCCCAAGCCGAAGACCAAGACGAAGCGCCCGTGCCTATGGATGACTCTTAG 432 0.5394 MAEEEENVSSRSEFPRGRVKKIMTLDKDVQRVSSEALFLVSRSTELFLQLLAEKSAEVAIEKKRKTVKLEHIRTAVKKHQPTRDFLLDSLPMPSQPAKPDKPALAADRVKSAPSGTRRIDHFFRKPEAQAEDQDEAPVPMDDS. 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01689 143 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 13 76 IPR003958 -
Seca6g01689 143 SUPERFAMILY Histone-fold 10 95 IPR009072 GO:0046982
Seca6g01689 143 Gene3D Histone, subunit A 1 92 IPR009072 GO:0046982
Seca6g01689 143 MobiDBLite consensus disorder prediction 88 143 - -
Seca6g01689 143 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 5 117 - -
Seca6g01689 143 MobiDBLite consensus disorder prediction 113 132 - -
Seca6g01689 143 FunFam Nuclear factor Y, subunit C13 1 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01689 Seca-Chr6 71352416 71352847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01689 4 131 CCAAT-HAP5 Transcription Factor Family AT5G43250 60.156 3.67e-49 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Seca6g01689 CBFD_NFYB_HMF 2.6e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01689 - - ccaj:109814845 199.904
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01689 6 71352416 71352847 Seca6g01689 6 71352416 71352847 ECH