Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01685 ATGTGTTTCTTCGCAAAAGTTAACCAAGTACACCAAAAGTATTCATCAGTAACTCAGAAGAACCTTCGTCCTCCTACCATGGACTCTACCTCCTTGCGATCAGTGGGACCATCAGCGACCAACGTACGACGCCGTGCAACACCTAACACCACTCACAGGCACGACAGATCCGTGGTTGGATTTGCGTTCAAGGAAATTTGGCATCCATATCAGAAACAAATTAAAGTTGCTAGGCGTTTGAATGATTCCCTTCATCCATGCTTGCCTAAGGTAGTACAATTCAAAGACCCTGCTGGAAATGTAAGCAACATTTCTGTAAAAATTCGGTCTGGAAGGCAATGCTTTGTTCAAGGTTTACGTCAGATGGGGCAGTTCTATGATCTTCACCATATAGTTCACCTGTATTACACATATGTTGGTAATGGTCAATTTGATATTAGAATAAAAAGGCCTCATGGCATAGGTGAGATTCAGTACCCTCAACCTCGACAACAAAATGTTCAACCTATCCCAGATGACCCGAAAGAGGTGCTTAGTGTGTCTGGATGTATCATATGGGAAACTCTTCTCACTAAGGCACAAATTAGAGGAATACACGGCCTGGTACTCCCTGTAAGGATTGTAACTGATTTCCTTGAGGAGGACCAAGAAATTATTCATATCAAGTTACCTAATGGTCAAGTGCAACCTTGGAACTTCCTTTGGAACACAACAATTCAAAGACACTGCAGGCTAGGCCAAGGCTGGTACCAATATTGTAGGGAAGAGCGACTACAGGAAGGAGATATGCTAATGTTCTGGAAATTGGATGGTGAAGACTTCATTAGGATGGACCTACGACGTCAAAGGGATTATCTACAATAG 864 0.4282 MCFFAKVNQVHQKYSSVTQKNLRPPTMDSTSLRSVGPSATNVRRRATPNTTHRHDRSVVGFAFKEIWHPYQKQIKVARRLNDSLHPCLPKVVQFKDPAGNVSNISVKIRSGRQCFVQGLRQMGQFYDLHHIVHLYYTYVGNGQFDIRIKRPHGIGEIQYPQPRQQNVQPIPDDPKEVLSVSGCIIWETLLTKAQIRGIHGLVLPVRIVTDFLEEDQEIIHIKLPNGQVQPWNFLWNTTIQRHCRLGQGWYQYCREERLQEGDMLMFWKLDGEDFIRMDLRRQRDYLQ. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01685 287 CDD B3_DNA 190 274 IPR003340 GO:0003677
Seca6g01685 287 Gene3D - 183 283 IPR015300 -
Seca6g01685 287 SUPERFAMILY DNA-binding pseudobarrel domain 184 276 IPR015300 -
Seca6g01685 287 Pfam B3 DNA binding domain 187 277 IPR003340 GO:0003677
Seca6g01685 287 MobiDBLite consensus disorder prediction 16 46 - -
Seca6g01685 287 MobiDBLite consensus disorder prediction 16 51 - -
Seca6g01685 287 ProSiteProfiles B3 DNA-binding domain profile. 186 283 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01685 Seca-Chr6 71286937 71288600 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca6g01685 B3 5.3e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01685 - K05061 lja:Lj1g3v3386930.3 73.9442