Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01675 ATGGCTAAAGCTTTGAGAGAAAGCACTAGGATCCTGATACTCGATGAAGGGCACAATCCTAGAAGTACCAAGTCAAGGTTGAGGAAAGAGTTGATGAAAGTAGAGACAAAACTGAGAATATTACTTTCAGGCACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCGAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATACAAAACAAAAGAAGGGAAATGATAAAATTCCAGAGAAAGCAAAACATTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAATTTGACTCATGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGAAAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACTATGTGCAGAATGAGCTTTTACAGAAACTACAAAAGAAAATGGTTGGGTCAAGCGTGTCCCATTTGGAGGGAGAGCTTATGGTAA 549 0.377 MAKALRESTRILILDEGHNPRSTKSRLRKELMKVETKLRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDTKQKKGNDKIPEKAKHLLETRARKFFLDDIANKFDSCDDEVRMQGLNMLRKITSGFIDVYESGNSEKLPGLQIYTLLMNLTMCRMSFYRNYKRKWLGQACPIWRESLW. 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01675 182 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 66 IPR027417 -
Seca6g01675 182 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 155 IPR044567 GO:0080188
Seca6g01675 182 Pfam SNF2-related domain 7 164 IPR000330 GO:0005524|GO:0140658
Seca6g01675 182 Gene3D - 2 105 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01675 Seca-Chr6 70936414 70936962 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca6g01675 SNF2_N 7.5e-09 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01675 K10875 - mnt:21390362 231.876