Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01672 ATGAAGGCTTCTCATTATGAGCCTTTATCTATAGAAAATGACAATGTTTGGTCATTGATTCCTGAGCTCAGTAAGATGATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAAAATATTGCAGGGTCAATACAACCAACACTTATGGAAGAAAAATGTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTTGCTACTTAAAGCTATTCCCAGATAAAAAGCCTCTCATCCTTGCTCCAAAAACTACACTGTATACTTGGTACAAGGAATTCAGCAAGTGGGAGATTCCTATTCCAGTGTATCTGATTCGCGATCGTAAAAACCTGAGAGATTTTGATGAAACACCATTGACTATTCCTGGAGTTCCAAACCCCACTGGTGATGTCAAGCATGTTTTGGATTGCCTTGAAAAGATTAAAAAGTGGCATCTACACCCCAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACAAGAGAAAGTTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGAGAAAGCACTGGGATCCTGATACTCGATGAAGGGCACAATCCTAGAAGCACCAAGTCAAGGTTGAGGAAAGAGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCAGGCACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCGAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATACAAAACAAAAGAAGGGAAATGATAAAATTCCAGAGAAAGCAAAACATTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCATGTGATGATGAAGTGAGGATGCAGGGTTTGAATATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGAAAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACCGATGTGCAGAATGAGCTTTTACAGAAACTACAAAAGAAAATGGTTGGGTCAAGCGTGTCCCATTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTTCGAATAAGTTGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCATTCGTGTTTTCAAGGAGGAGAAGGTTCTTATCTTTTGTCGCAACCTTGCACCTATGAAGCTTTTAGTACAATTGTTTGAGGAGTGCTTCAATTGGAAAAAGGGTAGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAATTTTGAGGATCCATGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAGTGGGTTTCCAACATGATTTTCAGTGAGGATTTTTCGGAGAACCCTTCCCAGTGGAAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTAAGAGTGACAATCCTAAAGCAATCCATATGATCATGAAGAATGAAAAAGCTTCAACAAACTGA 1725 0.3867 MKASHYEPLSIENDNVWSLIPELSKMMHDHQKKGFQFIWQNIAGSIQPTLMEEKCERRGGCVISHTPGAGKTFLVIAFLVCYLKLFPDKKPLILAPKTTLYTWYKEFSKWEIPIPVYLIRDRKNLRDFDETPLTIPGVPNPTGDVKHVLDCLEKIKKWHLHPSVLVMGYTSFLSLTRESSKYEHKKYMAKALRESTGILILDEGHNPRSTKSRLRKELMKVETELRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDTKQKKGNDKIPEKAKHLLETRARKFFLDDIANKIDSCDDEVRMQGLNMLRKITSGFIDVYESGNSEKLPGLQIYTLLMNLTDVQNELLQKLQKKMVGSSVSHLEGELMVTLGSIHPWLIKTATSSNKLVGSKVRFILSLIIRVFKEEKVLIFCRNLAPMKLLVQLFEECFNWKKGREILLLYGEQDLFERGKVIDNFEDPCISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKMVYVYQLLAKGSMEEDKYRRTTWKEWVSNMIFSEDFSENPSQWKAEKIEDDILREMVKSDNPKAIHMIMKNEKASTN. 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01672 574 SMART ultradead3 23 263 IPR014001 -
Seca6g01672 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 253 IPR027417 -
Seca6g01672 574 Gene3D - 4 289 IPR038718 -
Seca6g01672 574 Pfam SNF2-related domain 36 356 IPR000330 GO:0005524|GO:0140658
Seca6g01672 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 328 556 IPR027417 -
Seca6g01672 574 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 7 573 IPR044567 GO:0080188
Seca6g01672 574 CDD SF2_C_SNF 388 505 - -
Seca6g01672 574 Gene3D - 330 574 IPR027417 -
Seca6g01672 574 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 251 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01672 Seca-Chr6 70886823 70888646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01672 436 529 RAD5 or RAD16-like Gene Family AT5G05130 31.532 1.14e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca6g01672 SNF2_N 5.4e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01672 K10875 - gmx:100811703 820.076