Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01671 ATGAAGGCTTCTCATTATGAGCCTTTATCTATAGAAAATGACAATGTTTGGTCATTGATTCCTGAGCTCAGTAAGATGATCCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAAAATATTGCAGGGTCAATACAACCAACACTTATGGAAGAAAAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTTGCTACTTAAAGCTTTTCCCAGATAAAAAGCCTCTCATCCTTGCTCCAAAAACTACACTGTATACTTGGTACAAGGAATTCAGCAAACCATTGACTATTCCTGGAGTTCCAAACCCCACTGGTGATGTCAAGCATGTTTTGGATTGCCTAATAAGATTAAAAAGAGAAAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGAGAAAGCACTGGGATCCTGATACTCGATGAAGGGCACAATCCTAGAAGCACCAAGTCAAGGTTGAGGAAAGAGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCAGGCACATTGTTTCAGAATAATTTTGGTAAATACTTCAACACACTTTGCTTGGCAAGGTCGAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATACAAAACAAAAGAAGGGAAATGATAAAATTCCAGAGAAAGCAAAACATTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCATGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGAAAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTATGAACCTAACTGATGTGCAGAATGAGCTTTTACAGAAACTACAAAAGAAAATGGTTGGGTCAAGCGTGTCCCATTTGGAAACAGCAACAAGTTCGAATAAGTTTTACACTTCACAGGAACTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAGGGTAGGGTCAAAAGTAAGATTTATTTTGAGCCTTATCATTCGTGTTGTCAAGGAGGAGAAGCAATTGTTTGAGGAGTGCTTCAATTGGAAAAAGGGTAGAGAAATTTTGTTACTTTATGGGGAACAAGACCTATTTGAAAGAGGGAAAGTGATTGATAATTTTGAGGATCCATGTGGAGTTTCAAAGGTACTCCTTGCTTCAATTACAGCTTGTGCTGAAGGTATTAGTCTTACTGCAGTTTCTCGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGTGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTACCGTAGAACCACTTGGAAAGAGTGGGTTTCCAACATGATTTTTAGTGAGGATTTTTCGGAGAACCCTTCCCAGTGGAAAGCAGAGAAGATTGAAGATGATATAATAAGGGAAATGGTTGAGAATGACAATCCTAAAGCAATCCATATGATCATGAAGAATGAAAAAGCTTCAACAAACTGA 1605 0.3788 MKASHYEPLSIENDNVWSLIPELSKMIHDHQKKGFQFIWQNIAGSIQPTLMEEKSERRGGCVISHTPGAGKTFLVIAFLVCYLKLFPDKKPLILAPKTTLYTWYKEFSKPLTIPGVPNPTGDVKHVLDCLIRLKRENSKYEHKKYMAKALRESTGILILDEGHNPRSTKSRLRKELMKVETELRILLSGTLFQNNFGKYFNTLCLARSKFVQEVLKELDTKQKKGNDKIPEKAKHLLETRARKFFLDDIANKIDSCDDEVRMQGLNMLRKITSGFIDVYESGNSEKLPGLQIYTLLMNLTDVQNELLQKLQKKMVGSSVSHLETATSSNKFYTSQELNQLEKFKSDFRVGSKVRFILSLIIRVVKEEKQLFEECFNWKKGREILLLYGEQDLFERGKVIDNFEDPCGVSKVLLASITACAEGISLTAVSRLIFLDSEWNPSKIKQAIASAFRPGQEKMVYVYQLLAKGSMEEDKYRRTTWKEWVSNMIFSEDFSENPSQWKAEKIEDDIIREMVENDNPKAIHMIMKNEKASTN. 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01671 534 SMART helicmild6 369 454 IPR001650 -
Seca6g01671 534 Pfam Helicase conserved C-terminal domain 365 452 IPR001650 -
Seca6g01671 534 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 332 501 IPR001650 -
Seca6g01671 534 Pfam SNF2-related domain 36 332 IPR000330 GO:0005524|GO:0140658
Seca6g01671 534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 286 515 IPR027417 -
Seca6g01671 534 CDD SF2_C_SNF 344 465 - -
Seca6g01671 534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 211 IPR027417 -
Seca6g01671 534 Gene3D - 367 530 IPR027417 -
Seca6g01671 534 SMART ultradead3 22 221 IPR014001 -
Seca6g01671 534 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 135 533 IPR044567 GO:0080188
Seca6g01671 534 Gene3D - 4 247 IPR038718 -
Seca6g01671 534 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 209 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01671 Seca-Chr6 70865427 70867249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01671 380 472 RAD5 or RAD16-like Gene Family AT5G05130 39.362 2.70e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca6g01671 SNF2_N 4.1e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01671 K10875 - gmx:100811703 723.391