Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01670 ATGAATGCTTCTCATTATGAGCCTTTATCTATAGAAAATGACAATGTTTGGTCATTGATTCCTGAGCTCAGTAAGAAGATGCATGAGCATCAGAAGAAAGGTTTTCAATTTATTTGGCAAAATATTGCAGGGTCAATACAACCAACACTCATGGAAGAAAAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCTTGGAGCTGGAAAAACCTTTCTTGTTATTGACTTTCTTGTTAGCTACTTAAAGCTATTCCCAGATAAAAAGCCTCTGATCCTTGCTCCAAAAACTACACTATATACTTGGTACAAGGAATTCAGCAAACCATTGACTATTCCTGGAGTTCCAAACCCAACTGGTGATGTCAAGCATGTTTTGGATTGCCTTGAAAAGATTAAAAAAGAGAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGAGAAAGCACTGGGATCCTGATACTCGTTGAAGGGCACAATCCTAGAAGCACCAAGTCAAGGTTGAGGAAAGAGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCTGGAACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTTCTTGGCAAGGCCGAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATACAAAACAAAAGAAGGGAAATGATAAAATTCCAGAGAAAGCAAAACATTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCATGTGATGATGAACTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGGTTTATAGATGTTTATGATAGTGGGAATTCTGAAAAGCTTCCTGGTTTGCAAATTTATACACTGCTTATGAACCTAACTGATGTGCAGAATGAGCTTTTACAGAAACTACAAAAGAAAATGGTTGGGTCAAGCGTGTTCCATTTGGATGCAGCAACAAGTTCGAATAAGTTTTACATTTCACAGGAACTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCATTCGTGTTGTCAAGGAGGAGAAGCAATTGTTTGAGGAGTGCTTCAAATGGAAAAAGGGTAGAGAAATTTTGTTACTTTATGGCGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAATTTTGAGGATCCATGTGGAGTTTCAAAGGTACTCCTCCTTGCTTCAATTACAGCTTGCGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTTGGAGTGGAATCCATCAATGATAAAGCAGGCTATTGCAAGGGCTTTTTGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAGTGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAGTGGGTTTCCAACATGATTTTCAGTGACGAGTTTCCGGAGAACCCTTCCCAGTGGAAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTGAGAATGACAATCCTAAAGCAATCCATATGATTATGAAGAATGAAAAAGCTTCAACAAACTGA 1608 0.3812 MNASHYEPLSIENDNVWSLIPELSKKMHEHQKKGFQFIWQNIAGSIQPTLMEEKSERRGGCVISHTLGAGKTFLVIDFLVSYLKLFPDKKPLILAPKTTLYTWYKEFSKPLTIPGVPNPTGDVKHVLDCLEKIKKENSKYEHKKYMAKALRESTGILILVEGHNPRSTKSRLRKELMKVETELRILLSGTLFQNNFGEYFNTLFLARPKFVQEVLKELDTKQKKGNDKIPEKAKHLLETRARKFFLDDIANKIDSCDDELRMQGLNMLRKITSGFIDVYDSGNSEKLPGLQIYTLLMNLTDVQNELLQKLQKKMVGSSVFHLDAATSSNKFYISQELNQLEKFKSDFRVGSKVRFILSLIIRVVKEEKQLFEECFKWKKGREILLLYGEQDLFERGKVIDNFEDPCGVSKVLLLASITACAEGISLTAASRLIFLDLEWNPSMIKQAIARAFCPGQEKMVYVYQLLAKGSVEEDKYRRTTWKEWVSNMIFSDEFPENPSQWKAEKIEDDILREMVENDNPKAIHMIMKNEKASTN. 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01670 535 SMART ultradead3 23 221 IPR014001 -
Seca6g01670 535 Gene3D - 358 531 IPR027417 -
Seca6g01670 535 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 332 502 IPR001650 -
Seca6g01670 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 286 517 IPR027417 -
Seca6g01670 535 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 131 534 IPR044567 GO:0080188
Seca6g01670 535 SMART helicmild6 369 455 IPR001650 -
Seca6g01670 535 Pfam SNF2-related domain 36 323 IPR000330 GO:0005524|GO:0140658
Seca6g01670 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 211 IPR027417 -
Seca6g01670 535 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 209 IPR014001 -
Seca6g01670 535 Gene3D - 5 247 IPR038718 -
Seca6g01670 535 Pfam Helicase conserved C-terminal domain 366 451 IPR001650 -
Seca6g01670 535 CDD SF2_C_SNF 344 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01670 Seca-Chr6 70840330 70842156 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01670 380 473 RAD5 or RAD16-like Gene Family AT5G05130 40.426 2.01e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca6g01670 SNF2_N 3.1e-09 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01670 K10875 - gmx:100811703 710.294