Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01669 ATGGAAGAAAAACCTGAAAGAAAAGGTGGTTTTGTGATATCTCATACTCCTGGAGTTGGAAAAACCTTTCTTGTTATTTCCTTTCTTGTTAGCTACTTAAAGCTATTCCCAGATAAAAAGCCTCTGATCCATGCTCCAAAAACTACACTCTATACTTGGTACAAGGAATTCAGCAAGTGGGAGATTCCTATTCCAGTGTATCTAATTCGCGATCGTAAAAACCTGAGAGATTTTGATGAAACACCATTGACTATTCCTGGAGTTCCAAACCCCACTGGTGATGTCAAGCATGTTTTGGATTGCCTTGAAAAGATTAAAAAGTGGCATCTACACCCCAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACAAGAGAGAATTCAAAGTATGAACACAAGAATTATATGGCTAAAGCTTTGAGAGAAAGCTTTGGGATCCTGATACTCGATGAAGGGCATAATCCTAGAAGCACCAAGTCAAGGTTGAGGAAAGAGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCAGGCACATTGTTTCAGAATAATTTTGGTGAATACTTCATCACACTTTGCTTGGCAAGGCCGAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATACAAAACAAAAGAAGGGAAATGATAAAATTCCAGAGAAAGCAAAACATTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCATGTGATGATGAAGTGAGGATGCAGGGTTTTAACATGTTGAGGAAAATCACAAGTGGTTATATAGATGTTTATGAGAGTGGGAATTCTGAAAAGCTTCGTGGTTGGCAAATTTATACTCTGCTTATGAACCTAACTGATGTGCAGAATGAGCTTTTACAGAAACTACAAAAGAAAATGGTTGGGTCAAGCGTGTTCCATTTGGAGGGAAAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGTTCAAAACAGCAACAACTTCAAATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAGCATTATCATTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTTTAGTACAATTGTTTGAGGAGTGCTTCAAATGGAAAAAGGGTAGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAATTTTGAGGATCCATGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCGGAGTGTAATCCATCGAAGATAAAGTTGTCTATTGCAAGGGCTTTTCATCCTGGCCAGGAAAATATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTACCTCAAAACCACTTGGAAAGAGTAG 1419 0.3805 MEEKPERKGGFVISHTPGVGKTFLVISFLVSYLKLFPDKKPLIHAPKTTLYTWYKEFSKWEIPIPVYLIRDRKNLRDFDETPLTIPGVPNPTGDVKHVLDCLEKIKKWHLHPSVLVMGYTSFLSLTRENSKYEHKNYMAKALRESFGILILDEGHNPRSTKSRLRKELMKVETELRILLSGTLFQNNFGEYFITLCLARPKFVQEVLKELDTKQKKGNDKIPEKAKHLLETRARKFFLDDIANKIDSCDDEVRMQGFNMLRKITSGYIDVYESGNSEKLRGWQIYTLLMNLTDVQNELLQKLQKKMVGSSVFHLEGKLMVTLGSIHPWLFKTATTSNFRVGSKVRFILSIIIRVVKEEKVLIFCRNLAPMKLLVQLFEECFKWKKGREILLLYGEQDLFERGKVIDNFEDPCISLTAASRLIFLDSECNPSKIKLSIARAFHPGQENMVYVYQLLAKGSMEEDKYLKTTWKE. 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01669 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 467 IPR027417 -
Seca6g01669 472 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 2 201 IPR014001 -
Seca6g01669 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 204 IPR027417 -
Seca6g01669 472 Gene3D - 1 239 IPR038718 -
Seca6g01669 472 CDD SF2_C_SNF 340 455 - -
Seca6g01669 472 Gene3D - 283 472 IPR027417 -
Seca6g01669 472 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 5 472 IPR044567 GO:0080188
Seca6g01669 472 SMART ultradead3 3 213 IPR014001 -
Seca6g01669 472 Pfam SNF2-related domain 4 215 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01669 Seca-Chr6 70820127 70821644 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca6g01669 SNF2_N 2.8e-14 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01669 K10875 - gmx:100811703 634.795