Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01665 ATGGTTGGGTCAAGCGTGCTCCATTTGGAGGGAGAGCTTATGGTAACCCTTGGATCCATACATCCATGGTTGATCAAAACAACAATAAGTTCAAATAAGTTTTACACTTCACAGGAACTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCATTCGTGTTGTCAAGGAGGAGAAGGTTCTTATATTTTGTTTCAACCTTGCACCTATGATGCTTTTAGTACAATTGTTTGAGGAGTGCTTCAAATGGAAAAAGGGTAGAGAAATTTTGTTACTTTATGGGGAAAAAGACCTGTTTGAAAGAAGGAAAGTGATTGATAATTTTGAGGATCCATGTGGAGTTTCAAAGGTACTCCTTGCTTTAATTACAACTTGTGCTGAAGGTATTAGTCTTACTACAGCTTCTCGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGAAAAAGGCTCAATGGAGGAAAATAAGTACCGCAGAACCACTTGGAAAGAGTGGGTTTCCAACATGATTTTCAGTGAGGATTATTTAGAGAACCCTTCCCAGTGGAAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTGAGAATGACAATCCTAAACCAATCCATATGATTATGAAGAATGAAAAAGCTTCAACAAACTGA 759 0.386 MVGSSVLHLEGELMVTLGSIHPWLIKTTISSNKFYTSQELNQLEKFKSDFRVGSKVRFILSLIIRVVKEEKVLIFCFNLAPMMLLVQLFEECFKWKKGREILLLYGEKDLFERRKVIDNFEDPCGVSKVLLALITTCAEGISLTTASRLIFLDSEWNPSKIKQAIARAFRPGQEKMVYVYQLLEKGSMEENKYRRTTWKEWVSNMIFSEDYLENPSQWKAEKIEDDILREMVENDNPKPIHMIMKNEKASTN. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01665 252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 233 IPR027417 -
Seca6g01665 252 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 9 251 IPR044567 GO:0080188
Seca6g01665 252 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 58 219 IPR001650 -
Seca6g01665 252 Pfam Helicase conserved C-terminal domain 55 171 IPR001650 -
Seca6g01665 252 CDD SF2_C_SNF 47 183 - -
Seca6g01665 252 SMART helicmild6 87 172 IPR001650 -
Seca6g01665 252 Gene3D - 14 252 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01665 Seca-Chr6 70739193 70739951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01665 98 207 RAD5 or RAD16-like Gene Family AT5G05130 34.234 7.51e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01665 K10875 - qsu:112017743 357.451