Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01658 ATGAACAAATTTTCTCACGTTTTGGTCGAGGGACAGATCTATAAGATTACAAATTTCGGGCTCTTTCGTAACACAGGAAAATTCAGAGCAGCTGATCATGAGTTTAAGGTGACTTTCAATGCCACGACAAAGGTGATTGCTTGCCCAACTATGTCCATCCCCACCTCTGGATATGCCCTGATGAAGACGGAAGACATAAAGAGGACGAAAGGAAAATCAGATTATCTTTTAGATTTCATGTGCATGGTGTCGGCAATTTTAGAGGAGATTACCTTGAGCAAGGAAGGAAGGCAGACACGGATGATGTTGATTGATTTGGTTGATGAGATGGGAGAAATACGGCTAGCTTTGTTTGGCGATATGATAGATGTGGTTGCTGGTTTTTTAGCACTTCCTCGAACAGGCCTGCCTGTTCTTATAATTCAATTGGCCAAGGTCAATATGTACAAAGGTGAAGTGGGGATCCAGAATGTTTTCAATGCCTCCAAAGTTCTATGGAACCCAGACATTGAAGAGTCTATAGTGTTCAAAAATGGATTAGTTGTGCATGAAGTAGAAACAGAGGTGGAGATTAGAACCATATCTGAAAGGAGCAGGCCTGTCTCATTGACAAATGAATTTCTGAAATTGTATCCCAGAAAGTCTCTGTCACAGCTGCAACAGAATGCTGAGGATGGTTTCTTTATTATTCTGGCAACTGTGGATCAAGTTATTGAAGATGGATTCTGGTGGTATATGGCATGTCCCTGCATGAAATCTGTATCCTATGATGATGGGGTCCCATTTTGTGAGGATTGTGATAGCTATGTGTTTGATCTCACCCCTAGGTTCAAGCTTAAAATTGAGGTTTTTGATGGTACAGATAGTGCTCAGCTCATTTTATTTGACTCTGAATGTTATGCTATGCTTCACAAGTCTTGCCGTGAGATCTTGGCTGATATGAAGACTGTGAAAACTTGTGCTCATCCATCAGCTATTACTGATGTGGTTGGATCTGAGTTTTTGTTTAGAGTTGAACAAAAGTTTGATCCATCTTTCACCTTTGAGTCATGCTATCGAGTGAAGAGGGTGTGCACTGACCCAGATATCATAGATGAATTTAAATGTGGAATGGATGAGGAGACTCCATTGAAGAAGTTTGCCCCAATGTTTTCAAAGATTGAGGGAGGAGACACTAAGAATTGTTTGATGGAATTATCCCCTCAATGTAATCCTGCAATTACTGAGATAGATGTGAGCCCACTTTCTTGTGTTCCATCCCCCTCTATGGTGGAGGATGGTGGGAGTGCTTCTAAGAGGGACCCTGATCAATCTATTGATGGAATTAGTGAGAGGAAAAAGTGA 1344 0.4122 MNKFSHVLVEGQIYKITNFGLFRNTGKFRAADHEFKVTFNATTKVIACPTMSIPTSGYALMKTEDIKRTKGKSDYLLDFMCMVSAILEEITLSKEGRQTRMMLIDLVDEMGEIRLALFGDMIDVVAGFLALPRTGLPVLIIQLAKVNMYKGEVGIQNVFNASKVLWNPDIEESIVFKNGLVVHEVETEVEIRTISERSRPVSLTNEFLKLYPRKSLSQLQQNAEDGFFIILATVDQVIEDGFWWYMACPCMKSVSYDDGVPFCEDCDSYVFDLTPRFKLKIEVFDGTDSAQLILFDSECYAMLHKSCREILADMKTVKTCAHPSAITDVVGSEFLFRVEQKFDPSFTFESCYRVKRVCTDPDIIDEFKCGMDEETPLKKFAPMFSKIEGGDTKNCLMELSPQCNPAITEIDVSPLSCVPSPSMVEDGGSASKRDPDQSIDGISERKK. 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01658 447 Gene3D - 205 365 IPR012340 -
Seca6g01658 447 MobiDBLite consensus disorder prediction 418 447 - -
Seca6g01658 447 Pfam Domain of unknown function DUF223 3 66 IPR003871 -
Seca6g01658 447 SUPERFAMILY Nucleic acid-binding proteins 58 178 IPR012340 -
Seca6g01658 447 CDD RPA1_DBD_C 217 355 IPR047192 -
Seca6g01658 447 SUPERFAMILY Nucleic acid-binding proteins 211 360 IPR012340 -
Seca6g01658 447 Pfam Replication factor-A C terminal domain 227 343 IPR013955 -
Seca6g01658 447 MobiDBLite consensus disorder prediction 429 447 - -
Seca6g01658 447 Gene3D - 1 48 IPR012340 -
Seca6g01658 447 Gene3D - 52 188 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01658 Seca-Chr6 70492824 70495947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01658 2 310 Core DNA Replication Machinery Family AT4G19130 22.590 6.69e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01658 - - lja:Lj6g3v0884310.1 313.538