Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01655 ATGGCTAAAGCTTTGAGGGAAAGCACTGGGATCCTTATACTCGATGAAGGGCACAATCCTAGAAGCACCAGGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCTGCAAGGCCAAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATATAAAACAAAAGAAGGGAAATGATAAAAATCCAGAGAAAGCACAACATTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCAAGTTTACAAATTTATACTCTACTTATGAACCTAACTGATGTGCAGAATGAGCTTTTGCAGAAACTGCAAAAGAAAATGGTTGGGTCCAGCGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAACAACAAGTGCGGATAAGTTTTACACTTCACAGGAGCTAAACCAGCTAGAGAAATTCAAGTCAGATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCTTTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTTTAGTACAATTGTTTGAGGAGTACTTCAAATGGAAAAATGATGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTACTTGCTTCAATTACAGCTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAATGGGTTTCCAACATGATTTTCAATGAGGATTTTGTGGAGAACCCTTCCCAGTGGCAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATTGTTGAGAATGATGGGTCTAAAGCAATCCATATGATCATGAAGAATGAAAAATCTTCAAAAAACTAA 1113 0.3926 MAKALRESTGILILDEGHNPRSTRSRLRKGLMKVETELRILLSARPKFVQEVLKELDIKQKKGNDKNPEKAQHLLETRARKFFLDDIANKIDSSLQIYTLLMNLTDVQNELLQKLQKKMVGSSVFPLEGELMVTLGSIHPWLIKTTTSADKFYTSQELNQLEKFKSDFRVGSKVRFILSLIFRVVKEEKVLIFCRNLAPMKLLVQLFEEYFKWKNDGEILLLYGEQDLFERGKVIDKFEDPCGVSKVLLASITACAEGISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKMVYVYQLLAKGSMEEDKYRRTTWKEWVSNMIFNEDFVENPSQWQAEKIEDDILREIVENDGSKAIHMIMKNEKSSKN. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01655 370 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 351 IPR027417 -
Seca6g01655 370 Gene3D - 94 370 IPR027417 -
Seca6g01655 370 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 368 IPR044567 GO:0080188
Seca6g01655 370 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 176 337 IPR001650 -
Seca6g01655 370 CDD SF2_C_SNF 165 301 - -
Seca6g01655 370 SMART helicmild6 205 290 IPR001650 -
Seca6g01655 370 Pfam Helicase conserved C-terminal domain 173 289 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01655 Seca-Chr6 70379146 70380408 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01655 219 308 RAD5 or RAD16-like Gene Family AT5G05130 41.758 1.10e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01655 K10875 - gmx:100811703 507.294