Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01653 ATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTGCGGATAAGTTTTACACTTCACAGGAGCTAAACCAACTAGAGAAATTCAAGTCTGATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCTTTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCTGCAACCTTGCACCTATGAAGCTTTTAGTACAATTGTTTGAGGAGTGCTTCAAATGGAAAAAGGATGGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGAAAAGTGATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTACTTGCTTCAATTACAGCTTGTGCTGAAGGTATTAGTCTTACTCCAGCTTCTCGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGATTTTGTGGAGAACCCTTCCCAGTGGCAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATTGTTGAGAATGACGGGTCTAAAGCAATCCATATGATCATGAAGAATGAAAAATCTTCAAAAAACTAA 612 0.3938 MVTLGSIHPWLIKTATSADKFYTSQELNQLEKFKSDFRVGSKVRFILSLIFRVVKEEKVLIFCCNLAPMKLLVQLFEECFKWKKDGEILLLYGEQDLFERGKVIDKFEDPCGVSKVLLASITACAEGISLTPASRLIFLDSEWNPSKIKQAIARAFRPGQDFVENPSQWQAEKIEDDILREIVENDGSKAIHMIMKNEKSSKN. 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01653 203 Gene3D - 5 202 IPR027417 -
Seca6g01653 203 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 45 202 IPR001650 -
Seca6g01653 203 Pfam Helicase conserved C-terminal domain 42 158 IPR001650 -
Seca6g01653 203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 162 IPR027417 -
Seca6g01653 203 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 161 IPR044567 GO:0080188
Seca6g01653 203 SMART helicmild6 70 159 IPR001650 -
Seca6g01653 203 CDD SF2_C_SNF 34 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01653 Seca-Chr6 70253008 70253727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01653 88 160 RAD5 or RAD16-like Gene Family AT5G05130 43.243 8.91e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01653 K10875 - gmx:100811703 281.952