Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01652 ATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTGCAGGGTCAATACAACCAGCACTTATGGAAGTAGAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTATCATGGGGTATACTTCATTTTTATCACTAACGAGAAAGAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGGGAAAGCACTGGGATCCTTATACTCGATGAAGGGCACAATCCTAGAAGCACCAGGTCAAGGATGAGGAAAGGGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCTGGTACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCAAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATATAAAACAAAAGAAGGGAAATGATAAAAATCCAGAGAAAGCACAACATTTACTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGACGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATATTTATGAGAGTTGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTACTTATGAACCTAACTGATGTGCAGAATGAGCTTTTGTAG 714 0.3711 MHDHQKKGFQFIWQNIAGSIQPALMEVESERRGGCVISHTPGAGKTFLVIAFLIMGYTSFLSLTRKNSKYEHKKYMAKALRESTGILILDEGHNPRSTRSRMRKGLMKVETELRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDIKQKKGNDKNPEKAQHLLETRARKFFLDDIANKIDSSDDDVRMQGLNMLRKITSGFIDIYESWNSDKLPGLQIYTLLMNLTDVQNELL. 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01652 237 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 53 IPR044567 GO:0080188
Seca6g01652 237 Pfam SNF2-related domain 67 171 IPR000330 GO:0005524|GO:0140658
Seca6g01652 237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 141 IPR027417 -
Seca6g01652 237 Gene3D - 54 182 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01652 Seca-Chr6 70251982 70252953 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca6g01652 SNF2_N 3.9e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01652 K10875 - mnt:21390362 272.707