Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01641 ATGGAGTGGAATACAAAATCTCTCGGGCAGTGGGACTGGGAGCACTTGTTCTTCTTGAATGCAAAAGCAACTGAAAATCCCAGATTACAACCTACTGATTGGAGTGGTGAGGCAGATCGAGAAATCAATGTTGGGGTGTTGTATCCATCAGGTGGTAGTGGTTGTTCTGGTTCTGAACTGATACATGGTACTTCCTCAAGGTGCTCAAAATCAGCTTCTAACAATTCATCATCAAATGGGGATAGTAAGACATCTATGTTAACCCTGGAAGGTTCTCAAGATGATTCCAGTGGTAAGAAAGAATTGTCCAAAGGAGAGCCATTTGAAACTTCTACAGCAGCAGAGCCCTCTTCTGTCTCTGGTGAACCATTGCTAACTCTAAAGCTTGGTAAAAGATCATACTTTGAGGATGTTTGTGCAGGAAATGATTCCAGGAAACCATCTTCCTCTGTGGTTCCCATTTCATCTGGAAAGAAATGCAAATCCAATAGTCAGAACTTACAACTTCCAACCTGCCAGGTGGAAGGTTGTGGCCTTGATCTGTCATCTGCTAAAGATTACCATCGCAAACATAGAGTTTGTGAAAATCATTCCAAATCCCCTAAGGTGGTTGTAGCTGGTTTAGAACGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGCTCTGTCTGAGTTTGATGATCAAAAAAGAAGCTGCAGACGACGTCTTTCAGATCACAATGCAAGGCGCCGCAAACCTCAACCTGAAGCAGTGCAATTAAATCCATCAGCTTTGTCTTCATCACCCTATGATGGGAGGCAAATGATTACTCCATTTGCATTTTCAAGAACTGCTACAAATTTAGCATGGCCAGACACACACAGCAGCAAGCTCCCCCAGACAAAAGATTTTCTCCTGAAGCCTGTAAAAGCCTTCAATAAGATACCAAATATTGTCACTATGTTTTCTGATGATTCCAATGGCCTTCTTACATCCAAAGGCATAGGAATCAAGAACATTGTTCCAGGTTGTTCTCCTCTTTCTCAATAG 1029 0.4247 MEWNTKSLGQWDWEHLFFLNAKATENPRLQPTDWSGEADREINVGVLYPSGGSGCSGSELIHGTSSRCSKSASNNSSSNGDSKTSMLTLEGSQDDSSGKKELSKGEPFETSTAAEPSSVSGEPLLTLKLGKRSYFEDVCAGNDSRKPSSSVVPISSGKKCKSNSQNLQLPTCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVVVAGLERRFCQQCSRFHALSEFDDQKRSCRRRLSDHNARRRKPQPEAVQLNPSALSSSPYDGRQMITPFAFSRTATNLAWPDTHSSKLPQTKDFLLKPVKAFNKIPNIVTMFSDDSNGLLTSKGIGIKNIVPGCSPLSQ. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01641 342 SUPERFAMILY SBT domain 170 251 IPR036893 GO:0003677|GO:0005634
Seca6g01641 342 Gene3D - 162 233 IPR036893 GO:0003677|GO:0005634
Seca6g01641 342 MobiDBLite consensus disorder prediction 66 122 - -
Seca6g01641 342 MobiDBLite consensus disorder prediction 66 93 - -
Seca6g01641 342 ProSiteProfiles Zinc finger SBP-type profile. 169 246 IPR004333 GO:0003677
Seca6g01641 342 MobiDBLite consensus disorder prediction 236 260 - -
Seca6g01641 342 Pfam SBP domain 172 245 IPR004333 GO:0003677
Seca6g01641 342 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 67 260 IPR044817 GO:0003677
Seca6g01641 342 FunFam Squamosa promoter-binding-like protein 14 163 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01641 Seca-Chr6 69896155 69900939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01641 1 303 SBP-box Gene Family AT5G43270 44.479 1.82e-62 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca6g01641 SBP 4.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01641 - - gmx:100781289 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01641 6 69896155 69900939 Seca6g01641 6 69896155 69900939 ECH