Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01636 ATGAGTTTGCTCCATGTAATTGGGTTTGGTCTAAAGGTGGGGCATCTACTTTTGGTGCTATGTTGCTGGATTGTATCTGTCATTTACATCAACTGGTTCATTAGCGGTGGAATTATGGAAACAAAGATGGGTTTTCTGGGCTTTGGTGGCAAGATGTGGCTCAAATGGTGGGAGAAGATCTTGGGGAGCAGTTGCAAAATCCACAAACACTACTACCAGTGTATTGGGTCCATGAAAGTCAGGAGAACCTTGTGGAGGAAACTTTTGCTCATATGGGTGCTGATTTGGTCCATAGTATCTTTGTGGATCTTCTGCTGTATGAGCTTACAAGCCACTGAGAAGAGGAAAGAAACTCTGGCTAGCATGTGTGATGAAAGAGCTAGGATGCTACAGGATCAGTTTAATGTGAGTATGAACCATGTTCAAGCCATGTCCATTCTCATCTCAACCTTCCATCATGCCAAAAACCCCTCTGCCATTGACCAGAGAACATTTGCCAAGTATACAGAAAGAACTGCTTTTGAGAGGCCTCTTACAAGTGGTGTTGCATATGCTGTAAGGGTGCTTCAGTCTGAAAGGGAACAATTTGAGAAGCAACAAGGGTGGACTATTAAGAGGATGGCATTGGAGCCATCCCCCATTCAGGAAGAATATGCTCCTGTCATCTTTGCACAGGAAACAATTTCACATGTCATATCTGTTGATGTGCTTTCTGGAAAGGAAGACCGTGAAAATGTGTTGCGTGCAAGAGAATCAGGCAAAGGGGTTTTAACTGCTCCTTTCAGGCTGTTGAAAACAAACCGTCTAGGGGTTATCCTCACATTTGCTGTTTACAAGAGAGATCTTCCATCAAATGCAACCCCAAATGAAAGGGTTCAAGCAACTGATGGGTATCTTGGTGGGGTATTTGAAATTGAGTCATTAGTGGAGAAATTGCTTCAGCAACTTGCTAGCAAGCAAACTGTAATTGTGAATGTGTATGATACTACAAATCAAACCCACCCAATTTCCATGTATGGTTCAAATGTATCAGGTGATGGTTTCTATCATGTGAGCAGTCTTAACTTTGGAGATCCTTTCAGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCACCATGGCCATGGTTGGCAATAACTACATCGTTTGGCATCCTTGTTATTGCACTCCTTGTTGGACACATTTTTCATGCAACTGTGAACAGAATTGCCAAAGTAGAGGATGATTACCATGAGATGATGGAGCTTAAAAAACGAGCTGAGGCAGCTGATGTTGCAAAATCTCAGTTCCTTGCAACTGTTTCCCACGAGATCAGAACTCCAATGAATGGTGTTTTAGGTAAGTTGACAACTCAAACTTTCTATGTTATACTATATATACAGTGTCCAATGTGTATACATATATCACAAAAAGGAGGGATGTTGAATATGCTTATGGACACAGATCTAGATGTAACACAACAGGAATATGTCAGAACTGCACAGGGAAGTGGAAAAGCTCTTGTGTCAATTATAAATGAGGTTTTGGACCTGGCAAAGATTGAAGCTGGTAAACTAGAGCTTGAGGCTGTGCTGTTTGACATACGGGCAATTTTGGATGATGTGTTGTCACTATTTTTTGAGAAGTCTCAAGGAAAAGGAGTAGAGTTGGCAGTTTATGTCTCAGATCAGGTTCCTCAACAGCTAATTGGTGATCCAGGAAGGTTTAGACAAATAATTACAAATCTCATGGGTAACTCAATTAAGTTCACAGACAAAGGACATATCTTTGTCACTGTCCATCTTGTTGAGGAGGTTGTCCATTCAATAGAGGTTGAGACAACAGAAAGCACAGAATCTACAGATACATTAAGTGGTTTCCCAGTTGCTGATGGTCGCCTGAGCTGGAAAGGATTCCGGGCTTTCAGTCAAGAGGGGCCTCTTGGTTCTTTCTCATCCTCCTCCAATGATCTCATCAATTTGATTGTATCAGTTGAGGATACAGGTGAAGGTATTCCTGAAGAAGCTCAATCCAAGATCTTCACTCCATTCATGCAGGTTGGTCCATCCATCTCCAGGAAACATGGAGGAACTGGTATTGGTCTAAGCATTAGCAAGTGTTTGGTTAGCCTCATGAATGGGGAAATTGGATTTGTGAGCAGACCCAAGATTGGTTCCACTTTCACATTTACTGCTGTCTTCACCAATGCATGTCCCAATTCAAGTGAGTTAAAAAGTCAGCAAATCAACAACCAATCTCATCCTACATCCTCAGAATTTCAGGGCATGACTGCATTAGTCATTGACCCCAGACCAGTTAGAGCTAAAGTGTCAAGATATCACATCCAAAGGCTTGGCATTCATGTTGAATTAGTTTCAGATTTAAGTCAAGGTTTGTCCACCATAAGCAATGGCAATGTAGTTATTAATATGGTCCTGATTGAACAAGAGGTCTGGGATAGAGACTCAGGCATATCATCTCACTTTGTCAATAACATTAGGAAAGTTGATCATGTAGTTCCTCCAAAGCTATTCATTCTCGTTAATTCTAGTAGTTCTTCTAGAGCAAGTTCTGTAACATCAGGTGTTCATAATCCAACTGTCATCACAAAACCTCTGAGAGCAAGTATGCTTGCTGCTTCACTACAAAGAGCAATGAGTGTTGGGAACAAGGGGAATCCTCGAAATGGGGAGCATCAGAGTTTGTCACTCCACCATCTTCTTCTTGGGAGGAAAATTCTGATTGTGGATGACAATAGTGTCAACCGCACAGTAGCAGCTGGTGCTTTGAAAAAATATGGAGCTGATGTGGTTTGTGTAAGCAGTGGAAAAGATGCTATCTCTTTGCTAAAGCCACCCCATGAGTTTGATGCATGCTTCATGGATATTCAAATGCCAGAAATGGATGGTTTTGAAGCTACACGTGCAATTCGGGAGATTGAACAGAATGTGAACAGAGAAGTATCTGTTGAAGCCTTTGAGAATAATCCAAACTGGCATCTGCCCATTTTGGCTATGACTGCAGATGTGATCCAAGCTACACATGAGGAATGCCTGAAGTGTGGGATGGATGGATATGTTTCAAAACCATTTGAAGCTGAACAGCTTTATAGAGAAGTTTCACGGTTTTTCCAATGA 3120 0.4173 MSLLHVIGFGLKVGHLLLVLCCWIVSVIYINWFISGGIMETKMGFLGFGGKMWLKWWEKILGSSCKIHKHYYQCIGSMKVRRTLWRKLLLIWVLIWSIVSLWIFCCMSLQATEKRKETLASMCDERARMLQDQFNVSMNHVQAMSILISTFHHAKNPSAIDQRTFAKYTERTAFERPLTSGVAYAVRVLQSEREQFEKQQGWTIKRMALEPSPIQEEYAPVIFAQETISHVISVDVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPNERVQATDGYLGGVFEIESLVEKLLQQLASKQTVIVNVYDTTNQTHPISMYGSNVSGDGFYHVSSLNFGDPFRKHEMHCRFKQKPPWPWLAITTSFGILVIALLVGHIFHATVNRIAKVEDDYHEMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGKLTTQTFYVILYIQCPMCIHISQKGGMLNMLMDTDLDVTQQEYVRTAQGSGKALVSIINEVLDLAKIEAGKLELEAVLFDIRAILDDVLSLFFEKSQGKGVELAVYVSDQVPQQLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTVHLVEEVVHSIEVETTESTESTDTLSGFPVADGRLSWKGFRAFSQEGPLGSFSSSSNDLINLIVSVEDTGEGIPEEAQSKIFTPFMQVGPSISRKHGGTGIGLSISKCLVSLMNGEIGFVSRPKIGSTFTFTAVFTNACPNSSELKSQQINNQSHPTSSEFQGMTALVIDPRPVRAKVSRYHIQRLGIHVELVSDLSQGLSTISNGNVVINMVLIEQEVWDRDSGISSHFVNNIRKVDHVVPPKLFILVNSSSSSRASSVTSGVHNPTVITKPLRASMLAASLQRAMSVGNKGNPRNGEHQSLSLHHLLLGRKILIVDDNSVNRTVAAGALKKYGADVVCVSSGKDAISLLKPPHEFDACFMDIQMPEMDGFEATRAIREIEQNVNREVSVEAFENNPNWHLPILAMTADVIQATHEECLKCGMDGYVSKPFEAEQLYREVSRFFQ. 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01636 1039 CDD HisKA 427 514 IPR003661 GO:0000155|GO:0007165
Seca6g01636 1039 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 565 728 IPR003594 -
Seca6g01636 1039 Gene3D - 517 731 IPR036890 -
Seca6g01636 1039 Gene3D - 902 1039 - -
Seca6g01636 1039 ProSiteProfiles Response regulatory domain profile. 758 880 IPR001789 GO:0000160
Seca6g01636 1039 ProSiteProfiles Response regulatory domain profile. 906 1038 IPR001789 GO:0000160
Seca6g01636 1039 SMART HKATPase_4 565 730 IPR003594 -
Seca6g01636 1039 FunFam Histidine kinase 4 160 373 - -
Seca6g01636 1039 SUPERFAMILY CheY-like 753 881 IPR011006 -
Seca6g01636 1039 SUPERFAMILY CheY-like 904 1037 IPR011006 -
Seca6g01636 1039 CDD REC_hyHK_CKI1_RcsC-like 907 1034 - -
Seca6g01636 1039 Gene3D - 107 159 - -
Seca6g01636 1039 ProSiteProfiles CHASE domain profile. 156 366 IPR006189 -
Seca6g01636 1039 PRINTS Bacterial sensor protein C-terminal signature 655 669 IPR004358 GO:0016310|GO:0016772
Seca6g01636 1039 PRINTS Bacterial sensor protein C-terminal signature 714 727 IPR004358 GO:0016310|GO:0016772
Seca6g01636 1039 PRINTS Bacterial sensor protein C-terminal signature 690 708 IPR004358 GO:0016310|GO:0016772
Seca6g01636 1039 PRINTS Bacterial sensor protein C-terminal signature 673 683 IPR004358 GO:0016310|GO:0016772
Seca6g01636 1039 SMART REC_2 905 1034 IPR001789 GO:0000160
Seca6g01636 1039 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 507 725 IPR036890 -
Seca6g01636 1039 Gene3D CHASE domain 160 373 IPR042240 -
Seca6g01636 1039 CDD PRTases_typeI 859 934 IPR000836 -
Seca6g01636 1039 SMART HisKA_10 427 518 IPR003661 GO:0000155|GO:0007165
Seca6g01636 1039 PANTHER TWO-COMPONENT HISTIDINE KINASE 474 1031 - -
Seca6g01636 1039 Pfam His Kinase A (phospho-acceptor) domain 427 518 IPR003661 GO:0000155|GO:0007165
Seca6g01636 1039 CDD HATPase_EvgS-ArcB-TorS-like 570 728 - -
Seca6g01636 1039 Gene3D - 395 516 - -
Seca6g01636 1039 ProSiteProfiles Histidine kinase domain profile. 434 730 IPR005467 -
Seca6g01636 1039 Pfam Response regulator receiver domain 907 1033 IPR001789 GO:0000160
Seca6g01636 1039 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 419 514 IPR036097 GO:0000155|GO:0007165
Seca6g01636 1039 Pfam CHASE domain 159 339 IPR006189 -
Seca6g01636 1039 Coils Coil 404 424 - -
Seca6g01636 1039 SMART CHASE_2 156 341 IPR006189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01636 Seca-Chr6 69690915 69698094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01636 1 1038 Miscellaneous Gene Families AT1G27320 66.667 0.0 1382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca6g01636 CHASE 2.1e-36 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01636 K14489 - gmx:100776798 1640.55