Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01632 ATGCCACCTGGTTTGGAATACAACATTGATGAGCTGTATCAAGAAGCTAAGAAGAGATGGCTCAAACCTGTAGAAGTGCTTTACATTTTAAGGAATCACGAGAAGATTGAGTTCACCCATGTGCCACCTCATCAGCCACCTGGTGGTTCCCTGTTTCTATTTAATAGAAGAGTCCTGCGCTTCTTCCGTAAAGATGGTCACAATTGGCGGAAGAAAAGGGATGGCAGAACTGTGGGAGAAGCACATGAACGGCTTAAGGTTGGCAATGTTGAAATCCTAAACTGTTACTATGCACATGGAGAGGAGAACCGTACTTTCCAGAGGCGGAGCTATTGGATGTTGGACCCGGAATATGAGCATATTGTTCTTGTGCATTACAGAGATACAAATGGGGGAACATCCAATGCTGGACCTGCCACACAATTGTCACCAGGTTGCTCCTCTGTATTTAGTCAGAATCGTAGCTCAAATACTACTCAGAACCATGGGACAATATCCATGTTTGATGAATCATGTGAACCTAATCCAAATTTCTCTAGTCCAGGGTCTTTAGAAGTTACCTCTGGTATATTCAGCAGGAACAATGGAAGTGATCACTTGGATGAAGCAGACGTACAAGCTTTGCGCCAATTGGAGAAACGGTTAAATGATGATAGCTTCAAAGAAATTTCTCCCTTTCACAGTGAGTATGAAATTCCTCAAGATTTAATTCCATGCCAAGATCAAAAGGTGGTTTACAAACAAGATAAATCCCCAGCATTCCCTGGACCAGATGGTTGTGAACAGCCTTATGATGGATATAATGGAGGACATGATGACAGTGGTAATTACTATCATGGAGGGACCTTATCGTGGGCGGAGTTGCTGGATTCATGTAAGTTCTCATCTGTGATCAAGTTACCAGAGCAACATTCATATGAGGCATTTGAAAATGAAACGTCACTATCTTCCTCAGGAATGGAAATTATTGTCAACCAGGAAAACGGTCACTGGATAAACCCCAACAGTAATAATGCTGAAAACTATATGACTTACTTTAACCATTTCTTTCCATGTCCTCAAGATCCTCCATATTCTTTGGTAGAAACTCAAAGAACAAATTCTGACTATGCAACATGGTTTGACCAAACCCAAATTCAAGAACCTCTGGGTGCAGATTCAAGCTTGACTGTTGCACAGAAACAGAAATTTACAATTAAGGCAGTCTCCCCAGAATACTGTTATGCTGCTGAGACTACAAAGGTGATCATTGTTGGGTCATTTCTCTGCCCTCACTCAGATTCTACCTGGGCTTGTATGTTTGGTGATGTTGAAGTTCCGGTTGAGATAATTCAGGATGGAGTAATTAGCTGTGAAGCTCCATCCAACCTTCTTGGAAAGGTTACTTTGTGCATTACTTCAGGAAATAGGCAACCATGCAGTGAAGTCAGAGAATTTGAGTTTCGTAATAAGACCAATAGTTGTACTCGCTGTAATTCATTGGACCCAGAAGCCACTAGAAGTCCAGAAGAGTTGTTATTACTTGTTCGATTTGCAGAGATGCTCCTTTCTGCTTCAACTATAAAGGATGAAAACAGAGAATCTGGAGGTCATCTTCCAACAAAACAGAAAGAAGATGATGATTCATGGAGCCATATTATAGATGCTCTCCTAGTTGGCAGTGGAACTTCATCTGATACTATTGATTTTCTTCTTGAAGAGCTGCTGAAGGATAAGCTGCAGCTCTGGCTTTCTTGCAGATCCCGGGAAACAGATGAAGGAACAGGTTGTTCTTTGTCCAAGAAAGAGCAGGGGATTATTCACATGGTTTCTGGGTTGGGTTTTCAGTGGGCCTTGAACCCCATTCTCAGTTGCGGCGTGAATGTAAATTTCCGTGACATCAATGGATGGACCGCCCTTCATTGGGCTGCACGGTTTGGAAGGGAAAAAATGGTTGCTTCACTTATAGCAGCTGGTGCATCTGCTGGAGCAGTGACAGATCCAAGTTCACAAGATCCAACCGGTAGGACTGCTGCATCTATTGCAGCCAGCAATGGCCATAAGGGACTGGCAGGTTATCTTGCAGAGGCAGATCTAACAAGCCATCTGTCATCCCTCACATTGAAAGAGGGGGCGATTTGTAAAGCTTCTTTTGAGCTTGCAGCTGAGTTAACTGTCAGTAGTGTCTCTAAGGAAAATCTTGTAGCTAGTGAGGATCAGGTTTCACTACAGAAATCCTTGGATGCTGTCAGAAATGCTTCTCAGGCAGCTGCACGGATACAGGCTGCTTTTCGTGCACATTCTTTCAGAAAACAAAAAGAGAGAGAAGCTGCCACTGCTGCAGCTGCCGCCTGTCTAGATGGATGTGGTATCAGTGCAGGTAGCATTGATGATAACATTCCAGCGCTTTGTTCCATGTCAAAACTTGGCTTTTGGAGTTTACGTGATTACAATTCTGCTGCCTTATCAATTCAGAAGAAATATCGAGGTTGGAAAGGTCGCAAAGAATTCTTAGCATTGCGCCAAAAAGTAGTAAAGATACAGGCTGTTGTGAGGGGTTACCAGACTCGGAAGCAATACAAGTTAATAATATGGGCTGTTGGAATCTTGGACAAGGTTGTGCTACGATGGCGGAGAAAACGAATTGGTTTACATAACTTCCGGCAAGAAATGGAGTCAAATGAAGAAAGTGATGATGAAGATTTTCTCAAGGTGTTCCGAAAAGAGAAAGTACATGTAGCAATTGAAAAGGCTTTGAAACGGGTGCTTTCCATGGTCCATTCTACTGGTGCTCGTCAGCAATATAGTCGCTTGCTTGAGCTGTATCGTCAAGCCAAGGCTGAACTTGGCACCACTAAAGATGAAACACCGTCCTCAACTTCTATAGAGGGTGCTTTCAATATAGAAGATGATGACTTGTGTCAATTTCCCTTGGAAACGCCCTAG 2925 0.4297 MPPGLEYNIDELYQEAKKRWLKPVEVLYILRNHEKIEFTHVPPHQPPGGSLFLFNRRVLRFFRKDGHNWRKKRDGRTVGEAHERLKVGNVEILNCYYAHGEENRTFQRRSYWMLDPEYEHIVLVHYRDTNGGTSNAGPATQLSPGCSSVFSQNRSSNTTQNHGTISMFDESCEPNPNFSSPGSLEVTSGIFSRNNGSDHLDEADVQALRQLEKRLNDDSFKEISPFHSEYEIPQDLIPCQDQKVVYKQDKSPAFPGPDGCEQPYDGYNGGHDDSGNYYHGGTLSWAELLDSCKFSSVIKLPEQHSYEAFENETSLSSSGMEIIVNQENGHWINPNSNNAENYMTYFNHFFPCPQDPPYSLVETQRTNSDYATWFDQTQIQEPLGADSSLTVAQKQKFTIKAVSPEYCYAAETTKVIIVGSFLCPHSDSTWACMFGDVEVPVEIIQDGVISCEAPSNLLGKVTLCITSGNRQPCSEVREFEFRNKTNSCTRCNSLDPEATRSPEELLLLVRFAEMLLSASTIKDENRESGGHLPTKQKEDDDSWSHIIDALLVGSGTSSDTIDFLLEELLKDKLQLWLSCRSRETDEGTGCSLSKKEQGIIHMVSGLGFQWALNPILSCGVNVNFRDINGWTALHWAARFGREKMVASLIAAGASAGAVTDPSSQDPTGRTAASIAASNGHKGLAGYLAEADLTSHLSSLTLKEGAICKASFELAAELTVSSVSKENLVASEDQVSLQKSLDAVRNASQAAARIQAAFRAHSFRKQKEREAATAAAAACLDGCGISAGSIDDNIPALCSMSKLGFWSLRDYNSAALSIQKKYRGWKGRKEFLALRQKVVKIQAVVRGYQTRKQYKLIIWAVGILDKVVLRWRRKRIGLHNFRQEMESNEESDDEDFLKVFRKEKVHVAIEKALKRVLSMVHSTGARQQYSRLLELYRQAKAELGTTKDETPSSTSIEGAFNIEDDDLCQFPLETP. 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01632 974 FunFam Calmodulin-binding transcription activator 4 isoform A 508 693 - -
Seca6g01632 974 ProSiteProfiles Ankyrin repeat region circular profile. 628 654 - -
Seca6g01632 974 ProSiteProfiles IQ motif profile. 833 857 IPR000048 GO:0005515
Seca6g01632 974 ProSiteProfiles Ankyrin repeat profile. 628 660 IPR002110 GO:0005515
Seca6g01632 974 SUPERFAMILY E set domains 398 482 IPR014756 -
Seca6g01632 974 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 941 - -
Seca6g01632 974 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Seca6g01632 974 SUPERFAMILY Ankyrin repeat 599 691 IPR036770 -
Seca6g01632 974 SMART CG_1_2 12 130 IPR005559 GO:0003677
Seca6g01632 974 CDD IPT 398 482 - -
Seca6g01632 974 Pfam Ankyrin repeats (3 copies) 612 692 IPR002110 GO:0005515
Seca6g01632 974 Gene3D Immunoglobulins 392 487 IPR013783 -
Seca6g01632 974 Pfam IPT/TIG domain 398 475 IPR002909 -
Seca6g01632 974 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 807 861 IPR027417 -
Seca6g01632 974 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Seca6g01632 974 SMART ANK_2a 667 696 IPR002110 GO:0005515
Seca6g01632 974 SMART ANK_2a 628 657 IPR002110 GO:0005515
Seca6g01632 974 Gene3D - 810 857 - -
Seca6g01632 974 Gene3D - 574 698 IPR036770 -
Seca6g01632 974 ProSiteProfiles IQ motif profile. 746 775 IPR000048 GO:0005515
Seca6g01632 974 SMART iq_5 809 831 IPR000048 GO:0005515
Seca6g01632 974 SMART iq_5 745 767 IPR000048 GO:0005515
Seca6g01632 974 SMART iq_5 832 854 IPR000048 GO:0005515
Seca6g01632 974 ProSiteProfiles IQ motif profile. 810 839 IPR000048 GO:0005515
Seca6g01632 974 FunFam Calmodulin-binding transcription activator 2 809 857 - -
Seca6g01632 974 Pfam IQ calmodulin-binding motif 812 830 IPR000048 GO:0005515
Seca6g01632 974 Pfam IQ calmodulin-binding motif 835 854 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01632 Seca-Chr6 69613178 69622957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01632 5 970 CAMTA Transcription Factor Family AT1G67310 49.031 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Seca6g01632 CG-1 1.2e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01632 K21596 - gmx:100791430 1330.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01632 6 69613178 69622957 Seca12g05724 12 148925731 148935531 PCT