Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01626 ATGGCTAAAGCTTTGAGGGAAAGCACTTTGATCCTGATACTCGATGAAGGGCACAATCCTAGAAGCACCAGGTCAAGGTTGAGGAAAGGGTTAATGAAAGTAGAGACAGAACTGAGAATATTACTTTTTGGTACTTTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCAAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATACAAAACAAAAGAAGGTAAATGATAAAAATCCAGAGAAAACACAACATTTACTTGAGACACGTGCTAGGAAATTCTACCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGTGAGGATGCAGGGTTTGAACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGAAATTCTGAAAAGCTTCCTGGTTTGCAAAGTTATACTCTGCTTATGAACCTAAGTGATGTTCAGAATGAGCTTTTTAATAAACTGCAAAAGAAAATGGTTGGGTCCAACGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACATCAACAAGTGCGGATAAGTTTTACACTTCACAGGAACTAAATCAGCTAGAGAAGTTCAAGTCTGATTTCAGCATAGGGTCAAAAGTTAGATTTATTTTGAACCTTATCTTTCGTGTTGCCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGTTTTTAGTACAGTTGTTTGAGGAGTGCTTAAAATGGAAAAAAGGGTGGAGAAATTTTGTTACTTTGTGGGGAACAAGACCTGTTTGA 840 0.3762 MAKALRESTLILILDEGHNPRSTRSRLRKGLMKVETELRILLFGTLFQNNFGEYFNTLCLARPKFVQEVLKELDTKQKKVNDKNPEKTQHLLETRARKFYLDDIANKIDSSDDEVRMQGLNMLRKITSGFIDVYESGNSEKLPGLQSYTLLMNLSDVQNELFNKLQKKMVGSNVFPLEGELMVTLGSIHPWLIKTSTSADKFYTSQELNQLEKFKSDFSIGSKVRFILNLIFRVAKEEKVLIFCRNLAPMKFLVQLFEECLKWKKGWRNFVTLWGTRPV. 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01626 279 Gene3D - 11 142 IPR038718 -
Seca6g01626 279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 264 IPR027417 -
Seca6g01626 279 Gene3D - 143 263 IPR027417 -
Seca6g01626 279 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 266 IPR044567 GO:0080188
Seca6g01626 279 Pfam SNF2-related domain 11 169 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01626 Seca-Chr6 69368089 69368928 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca6g01626 SNF2_N 2.2e-08 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01626 K10875 - jre:108991882 350.903