Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01622 ATGGGAAGGGGAAGAGTGGAATTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAACGAAGGAACGGGCTTTTGAAGAAAGCTTATGAGCTTTCAGTTCTATGTGATGCTGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGCAGTTCAAGGTATATATATATATTCACTAAAATGCAACAACAACAAAAAAAATAA 231 0.381 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSRYIYIFTKMQQQQKK. 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01622 76 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca6g01622 76 FunFam MADS-box transcription factor MADS-MC 13 76 - -
Seca6g01622 76 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 65 - -
Seca6g01622 76 Gene3D - 13 76 IPR036879 GO:0003677|GO:0046983
Seca6g01622 76 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca6g01622 76 SUPERFAMILY SRF-like 2 72 IPR036879 GO:0003677|GO:0046983
Seca6g01622 76 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca6g01622 76 CDD MADS_MEF2_like 2 61 IPR033896 GO:0000977|GO:0045944
Seca6g01622 76 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca6g01622 76 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca6g01622 76 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca6g01622 76 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01622 Seca-Chr6 69273630 69273860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01622 1 71 MADS-box Gene Family AT1G24260 87.324 4.07e-39 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca6g01622 SRF-TF 2.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01622 - K09264 oeu:111372629 126.716