Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01587 ATGGTGACGGCGTCTTCCATAGTCCTCACGGTCATGGGTGCTGCCCCTTGCTTTTTTTTGTGTTTTCTTCCTGTAATTCACTGCCTTGTCTGTGGGATGGATCACCAAGATCAAAGAAGAACTCACACTCAAGGACACGAGAGTCATGGAGTTCATGTATGTCACAAATGTGGATGGCCTTTCCCGAACCCACACCCAAGTGCCAAACATAGGCGTGCTCACAAGAAAATCTGTGGAACCATAGAAGGGTACAAACTGTTAGTTTCAGAGAGCCAAACCCATTCCGTCTCTTCAGATGATGAACAACTTTCTGATGATGATCGCAACACAAAAGGCAAGTGGCCTACTTATTTACACCGGATTATTATGCTATGTCCAAACGCCTTGGATGCTCATAACAATGAGAAAGATTGTGTTGGAACCGGAGAAAATTTAAATAGGTCAGGTGATGAGGTGTTTTTAGATGCAATTGCAAACTTTTCTGATGGTGGACTAAGTCCAGGAAATAAGGAAGCTTTAAGAGATAGTTTGGACTCAGCTACTGATATGGAAACAGTTGACAGAAAATATCCAGACATTTCAGGGTATTCTGAGGACAATGATTTTAATGCTGGAGACGTTAATCAATTAATTGTCAAGTCAAGAGATGATGGCAAAATGCAAGATCCTAATATTTTGCAGAGTGAAAGGGGTGAGGATGGAAAAATGCTAGAGTTAAAAGGTCAACTGTTAAACTCTTCTGTGGATCCATTATCAAATAGCATTACAGATTTGAGGACCAAAGAATTCACTGTTGCACATAGTGATGATTGCTTTGGTTTGTCAAGTGACTCAGTTCCTAGCAAAGCTGGAGCTGCACCAGCTGGATTGCTAGAAAATAAGATCTTTGCTGGAGAAAATATGAGAGATTGCAGTTTAACATCTGTTGCAAAGGAGACTGATGTGAAAGCAAAGGGTGAGATCAAATCAGACAGAGACATGGCTGAGATTGTGGTCTCTTCCTATATGAGTGAAACATGTGAGGGAGTAACTGAATTAGCAGTTAGTAATGTGGTTAACTCGGACTGTCAAGTGGCTAGTGGAGCTTTTAATCTGAAGGAAAAGAACAGTGCTGAGTTCCTTTCTGTGATGCCCCAAGATGAACTTCCTCTTGAAGTAAATTCTACTGTAAGCACAAACGCTTCCAGAAATGGTGTTCAGGTGGAATCTGTACATATGATACAGTTTGCTACTTCAAGTGATGACAAGATGTTGCAGGAAAGGGGAGAGGGAAAGATTAGTGTGTTTACATATCCTTCATTTAATGATGGGCCTGGTGTGGCACATCCTCAATATAAGTATGAAGATGTTAAGGATCATGAAGGAGTATTATTACAAAATTCTTTAAGCCTTCATTCATCTGAAACATTGAAACAAAAGCATGATGACTTGAAGGCTTATGTTGCTGAGGAAAATAATTTTCTCATCAATCAAAGTCAAATGAGTGAAAAAAGAGAGGTCCTCTCTCCGAATGTGCATGTTTTAGATAGTACAATGAAGGAACAGAACATCTGTGAGCTTGTGGATGAAGGAAAGCATGCTGAAGAGAGCATTGAAATTTCATCTGTCAAGTTCATGGTTGAAAGTGATAACAGATTAGTTGAAACTGGAACCTCTGTGAATGCTATGAAAGCTGAGATTAATGAGGGTTATATGATTCACTTCTCTGAAGAACAGGAATCTGATGATGCTCATAAAAATTTAAAACAGAAAGCTTTACCAGAAGGTAGTTTCATGGCTGCATCAAAAGAGAAATACAGTGATGCATCCTTAGGTGGTTCAACCGCTGAAACAACTAGTGTAATCAGCTCAGACAATGTAAATCATCTTGACAAAAACATAAAGGAAATAAATGACGCAGCTGTGGATGGTGAGTGCAAAGGAGCTAATGTTGAAAATGAAATTGGGATCAGCATAAAAACTTCTCAACCCAATAACCTGCATTTGGAAGGCAAGCCATCAAGTGGTGTATATAAGAGTGATGAGGTGGTTGATATGGGTAAAATTGAAAAATGTGATATAATTGATGCTCAGTGTACAGAAAGGCTCATTGTGAAAGATACTTCATTGCTGAAGTCTGGTAGTAGTAATTGTGATTTTCATGTTGTTTCAGAGGTTGTAATGGATAGGTCTGTAAGGATGCAAAAAGGTGATGAGTGTGCAAGTACAGGTCCACTGTCAAGTGTTCAGGAAGACATCAAAGATAATGAAACCAATGGCAATGGCAGAAGAAATGAAGAATGTAATAGATTTTTTGGTTTTTCTGTTGATTCACATCAAACACAAGATGAAGAACTATCAGTGAAGGCTGCAGAAGACCTTGGTAGGAGCTATTCATCACTTCCTTCATCAAATATTAAGACCTCTATTTCAGTTTCAGTTGTCTCCATGCAATCTGATGTTGTAAAAGCTGTTATTGGTGCAGAAGGTTTACCATCAACTGATTTGCTGGCATCAACAGAAGCAGGGAAATCCAACTTGAAGGACCCAAATGCTGCATCTGAGGGACAGCAATATGAAAAATCAGAAATGTTTGAACCGCCATCGTTCATGACATTGGTTGAACCTGGACATGTGGTTGGTCCAAAAGTTGTTGCATCTGAAGTCCAGAAGGGACCGGATGAACAACATCCAAGCTCTACCTCTTCACAGGCTGGTTGGTTTCCCACCATAACTCACGTGACTAATGAGTCTCAAGGGAGAAAGAGGAATGAAAAAACAATAGCTAAGATAACAAACTTGAGCACCAGTAAGCAGCACACACCTCTAAAGAGTTTATTGGGTGAAGCTGCCCGTAACAAGAAGCCAAAGTCTCCAAAACTGGGAGAAAATTCAGTGAATCAGAAAAATAGTGAAGTACAAGAAGATAATGGTTCTGGATTGACAACTGTTAACTCCATTCTAGGGGCTGAATCACCTTCCACTCAAGCTGTAAAAGGAGAGGGTGGAAAAGAATGGAACTCCCCAGCTAGATACCCTGCAGGCATCAAGAAACAAAATAAGAAAGTTAAGAGCAAACCATTCTGGATACAATTTGTATGCTGCTCATCTGTGGATCCTCAGCGAAGGTAG 3111 0.3999 MVTASSIVLTVMGAAPCFFLCFLPVIHCLVCGMDHQDQRRTHTQGHESHGVHVCHKCGWPFPNPHPSAKHRRAHKKICGTIEGYKLLVSESQTHSVSSDDEQLSDDDRNTKGKWPTYLHRIIMLCPNALDAHNNEKDCVGTGENLNRSGDEVFLDAIANFSDGGLSPGNKEALRDSLDSATDMETVDRKYPDISGYSEDNDFNAGDVNQLIVKSRDDGKMQDPNILQSERGEDGKMLELKGQLLNSSVDPLSNSITDLRTKEFTVAHSDDCFGLSSDSVPSKAGAAPAGLLENKIFAGENMRDCSLTSVAKETDVKAKGEIKSDRDMAEIVVSSYMSETCEGVTELAVSNVVNSDCQVASGAFNLKEKNSAEFLSVMPQDELPLEVNSTVSTNASRNGVQVESVHMIQFATSSDDKMLQERGEGKISVFTYPSFNDGPGVAHPQYKYEDVKDHEGVLLQNSLSLHSSETLKQKHDDLKAYVAEENNFLINQSQMSEKREVLSPNVHVLDSTMKEQNICELVDEGKHAEESIEISSVKFMVESDNRLVETGTSVNAMKAEINEGYMIHFSEEQESDDAHKNLKQKALPEGSFMAASKEKYSDASLGGSTAETTSVISSDNVNHLDKNIKEINDAAVDGECKGANVENEIGISIKTSQPNNLHLEGKPSSGVYKSDEVVDMGKIEKCDIIDAQCTERLIVKDTSLLKSGSSNCDFHVVSEVVMDRSVRMQKGDECASTGPLSSVQEDIKDNETNGNGRRNEECNRFFGFSVDSHQTQDEELSVKAAEDLGRSYSSLPSSNIKTSISVSVVSMQSDVVKAVIGAEGLPSTDLLASTEAGKSNLKDPNAASEGQQYEKSEMFEPPSFMTLVEPGHVVGPKVVASEVQKGPDEQHPSSTSSQAGWFPTITHVTNESQGRKRNEKTIAKITNLSTSKQHTPLKSLLGEAARNKKPKSPKLGENSVNQKNSEVQEDNGSGLTTVNSILGAESPSTQAVKGEGGKEWNSPARYPAGIKKQNKKVKSKPFWIQFVCCSSVDPQRR. 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01587 1036 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 33 759 - -
Seca6g01587 1036 MobiDBLite consensus disorder prediction 926 1006 - -
Seca6g01587 1036 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Seca6g01587 1036 MobiDBLite consensus disorder prediction 953 986 - -
Seca6g01587 1036 MobiDBLite consensus disorder prediction 882 903 - -
Seca6g01587 1036 MobiDBLite consensus disorder prediction 731 758 - -
Seca6g01587 1036 MobiDBLite consensus disorder prediction 734 748 - -
Seca6g01587 1036 MobiDBLite consensus disorder prediction 886 903 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01587 Seca-Chr6 68115771 68119810 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca6g01587 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01587 - - gmx:100820280 916.376