Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01570 ATGGAGCTTGTTCGTGGTGGTGAGCTCTTCAACAAGGTAGCCAAAGGTCGATTGAAAGAAGACCTCGCCAGAGTCTACTTTCAGCAGTTAATCTCCGCCGTTGATTTCTGCCACAGCTGCGGTGTTTACCACCGTGACCTCAAGCTGGAGAATCTTCTCCTTGACGAAGATGGGAACCTTAAGGTCTCTGATTTTGGTCTCAGCACCTTCTCCGGCCAGGATGGGTTGTTGCACACCACGTGCGGCACGCCGACGTATGTTTCACCGGAGGTGATTGCGAAGAAAGGCTACGACGGTGCTAAGGCTGATATTTGGTCTTGTGGAGTAATCCTCTATGTGCTTCTTGCAGGGTTTTTACCTTTTCAGGATGATCATTTGGTTGCTATGTATAAGAAGATTTACAGGGGTGACTTTAAATGTCCACCTTGGTTCTCTGTGGAAGCTCGAAGGCTTGTTACCAAGCTTCTAGATCCGAATCCGAATACTCGAATAACAATTTCAAAGATCATGGACTCGTCTTGGTTCAAGAAACTGGTGCCGGAGAAGAAGAGAGAGGAGAGGGAGGAGTTGAGGTTCGTGACGGCGGGGACGCCGAGCAGAGTGATATCGAGGTTGGAGGAGGTGGCGATGGCGGTGATGTGA 642 0.4969 MELVRGGELFNKVAKGRLKEDLARVYFQQLISAVDFCHSCGVYHRDLKLENLLLDEDGNLKVSDFGLSTFSGQDGLLHTTCGTPTYVSPEVIAKKGYDGAKADIWSCGVILYVLLAGFLPFQDDHLVAMYKKIYRGDFKCPPWFSVEARRLVTKLLDPNPNTRITISKIMDSSWFKKLVPEKKREEREELRFVTAGTPSRVISRLEEVAMAVM. 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01570 213 SMART serkin_6 1 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01570 213 ProSitePatterns Serine/Threonine protein kinases active-site signature. 42 54 IPR008271 GO:0004672|GO:0006468
Seca6g01570 213 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 1 194 - -
Seca6g01570 213 Pfam Protein kinase domain 1 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01570 213 ProSiteProfiles Protein kinase domain profile. 1 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01570 213 Gene3D Transferase(Phosphotransferase) domain 1 1 208 - -
Seca6g01570 213 FunFam Non-specific serine/threonine protein kinase 4 182 - -
Seca6g01570 213 SUPERFAMILY Protein kinase-like (PK-like) 1 185 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01570 Seca-Chr6 67543748 67544520 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01570 1 185 CBL-interacting serine-threonine protein kinases AT4G30960 80.851 1.65e-111 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca6g01570 Pkinase 2.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01570 - K07198 var:108321114 342.043