Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01565 ATGGTTCCAAGATCAATGTCTATATTACTTTGTATCCTTGTCATATTGATATCTCAATCCAACGCCCAGCCAGGATTCCTACGCCACTTTTGTATCGATGACAATGGTAATTACACTGCTAACAGTACCTACCACAACAACCTAAATACCCTTTTGTCCAACCTTTCTTCAAACACACAAATTGACTATGGTTTCTACAATTTTTCTTACGGCCAAGGTAGTACTGACAGAGTAAACGCAATTGGGCTTTGTAGAGGAGATGTTAAACCAGATGCTTGTCGTAGTTGCCTCAATGATTCCAGAGTGCTTCTCACACAACTCTGTCCAAATCAGAAGGAGGCAATTGGGTGGTATGACAATTGCATGTTACGCTACTCCAATCGCAGCTCAATATTTAACAGTTACGAAATTACACCTAGTTTCTATATGAGTAACCATGAAAATGCTTCAGATGTTGATCAATTCAATGAGGTGTTAAGGAACTTGCTAGATAGCCTCATAAGCAATGCTTCATCAGGGGACTCCCTGCGTAAGTTTGCTGTATCATATGTAAAAGGGCCAGGCTTTCAAACTATATTTGGTCTTGTGCAGTGTACACCTGATTTGTCACAGCAAGATTGCAATGCATGTTTGGTTGAGGCTATCTCTGAAATCCCAAAATGTTGTGATAGCTCGAGAGGTGCTAGAGTTCTAAGACCTAGCTGTAACTTCAGATATGAGATATACCCCTTCTATGATCTTACCAATGTTGCAACATCACAATCACCACCACCAACAGTGTCTGCTGATCCTCCCTCATCCACACAAGGTTCTGTTTTGTCAGGGAAGAGCAACACATCGCGAACTGTAATTATAATACTTGTACCAATTATTGCCTTTGTCACACTAGTCATCCTTATCTTCATCTATTTAAGAAAGAGGAAGCCCCAGAAACATGATAAAGTAGAACTTACTGGCTTCAACTCAATCCCAGATGAAGTTGAAAATGGTGCTGATGAAATTAGCCCAACAGAGACATTGCAATTGGACTTCGCCACCATCATGGCTGCTACCAACAACTTTTCTGATGCAAATAAGCTAGGACAAGGAGGATTTGGATCTGTTTATGAGGGTAGGCTCCCCAATGGTCAAGAAGTTGCAGTAAAAAGATTGTCTAGGAATTCCATGCAAGGAGACATAGAGTTTAAGAATGAAGTGTTGTTAGTGGCCAAGCTTCAGCACCGAAATTTAGTTAGACTTCTAGGTTTCTGTTTGGAAAGGAGAGAAAGACTACTGGTCTATGAGTTTGTTTCCAATAAAAGCCTTGATTTCTTCATATTTGATCAAATCAAACGTGCACAATTGGACTGGGAAAGGCGGTACAAAATCATAGGAGGCATTGCTAGAGGCCTTCTTTATCTTCATGAAGATTCACGTTTGAGGATTATTCATCGTGACCTCAAAGCAAGCAACATTCTTTTGGATGAAGAGATGCACCCTAAGATATCAGATTTTGGCATGGCAAGATTAGTTGGAATAGACCAAACACAGGGCAATACAAGTAGAATTGTTGGAACCTTTGGATATATGGCACCTGAGTATGCTCTCCATGGACAATTCTCCGTGAAGTCTGATGTTTATAGTTTTGGAGTACTTGTTCTGGAGATTGTGACTGGCCAGAAAAATAACAGTGCACAAGGAAGGGAATGTGTAGAGGATCTAGTAACCTTTGCATGGCGAAATTGGAGGGAAGGGACCGCCTCAAGTATAGTTGATCCTGCGATTACTGATGGTTCAAGAAATGAAATAATGAGATGCATCCATATTGCCCTGCTTTGTGTTCAGGAAAGTGTAGTTGACAGACCAACCATGGCTTCAGTTGCACTTATGCTTAACAGCTACTCTGTTACTCTCCCTTTGCCCTCACAACCTGCTTACTTTATCCATGATAGAACAAGTTCATCAGACATTCAATCAGAAGAGTACGATTCAGAGACGAGAGTATTGGCTGAATCAAATATCCACTCTGTTCAATCTTCAGTTAATGAGGCTTCCATTACTGAACTGTTTCCTCGCTAG 2058 0.4082 MVPRSMSILLCILVILISQSNAQPGFLRHFCIDDNGNYTANSTYHNNLNTLLSNLSSNTQIDYGFYNFSYGQGSTDRVNAIGLCRGDVKPDACRSCLNDSRVLLTQLCPNQKEAIGWYDNCMLRYSNRSSIFNSYEITPSFYMSNHENASDVDQFNEVLRNLLDSLISNASSGDSLRKFAVSYVKGPGFQTIFGLVQCTPDLSQQDCNACLVEAISEIPKCCDSSRGARVLRPSCNFRYEIYPFYDLTNVATSQSPPPTVSADPPSSTQGSVLSGKSNTSRTVIIILVPIIAFVTLVILIFIYLRKRKPQKHDKVELTGFNSIPDEVENGADEISPTETLQLDFATIMAATNNFSDANKLGQGGFGSVYEGRLPNGQEVAVKRLSRNSMQGDIEFKNEVLLVAKLQHRNLVRLLGFCLERRERLLVYEFVSNKSLDFFIFDQIKRAQLDWERRYKIIGGIARGLLYLHEDSRLRIIHRDLKASNILLDEEMHPKISDFGMARLVGIDQTQGNTSRIVGTFGYMAPEYALHGQFSVKSDVYSFGVLVLEIVTGQKNNSAQGRECVEDLVTFAWRNWREGTASSIVDPAITDGSRNEIMRCIHIALLCVQESVVDRPTMASVALMLNSYSVTLPLPSQPAYFIHDRTSSSDIQSEEYDSETRVLAESNIHSVQSSVNEASITELFPR. 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01565 685 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
Seca6g01565 685 Gene3D - 25 129 IPR038408 -
Seca6g01565 685 Gene3D - 138 244 IPR038408 -
Seca6g01565 685 SUPERFAMILY Protein kinase-like (PK-like) 344 649 IPR011009 -
Seca6g01565 685 SMART serkin_6 354 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01565 685 FunFam Cysteine-rich receptor-like protein kinase 10 320 429 - -
Seca6g01565 685 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 34 682 - -
Seca6g01565 685 ProSiteProfiles Gnk2-homologous domain profile. 26 130 IPR002902 -
Seca6g01565 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Seca6g01565 685 FunFam cysteine-rich receptor-like protein kinase 10 430 631 - -
Seca6g01565 685 CDD STKc_IRAK 360 625 - -
Seca6g01565 685 Gene3D Transferase(Phosphotransferase) domain 1 430 631 - -
Seca6g01565 685 ProSiteProfiles Protein kinase domain profile. 354 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01565 685 Gene3D Phosphorylase Kinase; domain 1 323 429 - -
Seca6g01565 685 FunFam Cysteine-rich receptor-like protein kinase 10 139 244 - -
Seca6g01565 685 Pfam Protein tyrosine and serine/threonine kinase 358 620 IPR001245 GO:0004672|GO:0006468
Seca6g01565 685 MobiDBLite consensus disorder prediction 255 275 - -
Seca6g01565 685 Pfam Salt stress response/antifungal 147 241 IPR002902 -
Seca6g01565 685 Pfam Salt stress response/antifungal 31 127 IPR002902 -
Seca6g01565 685 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 24 130 - -
Seca6g01565 685 ProSiteProfiles Gnk2-homologous domain profile. 137 244 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01565 Seca-Chr6 67118305 67121758 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01565 4 685 Receptor kinase-like Gene Family AT4G21410 50.578 0.0 659
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca6g01565 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01565 - - gmx:113000773 996.112