LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca6g01564	ATGGCACCTTCAAGAGTGATCTCTTTTCTTTGTCTCCTTGTTATCCTCATATCTCACACCACCTCCCAGCCAAGCTTTTTGTACCATTACTGCATGAATGATAATGGCAACTACACTGCAAATAGTGCCTACCAGACCAACCTCAATACTCTTCTATCCACTTTGTCTTCCAACAAAGAAATTGATTATGGCTTCTTCAATTTCTCTCAAGGCCAAAACTCTGACAAAGTTAATGCAATTGGGATGTGTAGAGGAGATGTTAAGCCAGATGTGTGCCGAAGTTGCCTCAATGATTCCAGAATCCTTCTCACACAGCGTTGTCCAAACCAAAAAGAGGCCATTGGGTGGTATGACAATTGCATGCTACGTTACTCAAACAGCTCAATATTTGGTGTTATGGAAGCTGATCCTACATATTTTCTGTGGGACCAAAATAATGCAACTGATATGGATCAGTTTAATGAAGTGCTTAGGGGCTTAGTGGATAACCTGAGAAGTAAAGCTGCATCTGGTGATTCCCTTAAAAAGTATGCTGCAGGAAGTGCAGCAGGTCCAAGCTTTCAAACTATATTTGCTCTTCTGCAATGCACACCTGATTTATCAGAGCAACAGTGCAATGATTGCTTGGTCCGGGCTATTGCAGATATCTCAAGTTGTTGTTCTGGCAAGATTAGTGGCAGAATAGGAAAACCAAGCTGCAATCTTAGATTTGACACTTCTCCCTTCTATGACTCTACACTTGATAACTCTCCGTCTTCACAAGTGCCTCCTCCATTCACTAATACCACTTCCACAGAAGGTACCTGTTATGTTGGAAAGAGCAACACAACACGAATTGTCATCGCAGTAGTTGTGCCAATTGTAGCCATTCTTGTGCTAGTCATCTCTGTTTGCTTTTTCTTAAGAGGAAGAAAGCAAAGGAAAAATATTGACATTGATAGTAAGACAAACTTACAAAGCACTGTTTTCATAGCTGAAGTTGACAATGAAATTGAGCCTACTGAGACATTGCAATTCAACTTTGATACCATACGAATGGCTACAAATAACTTTTCTGAGACAAATATGCTAGGACAAGGAGGATTTGGACCTGTATACAAGGGTAAGCTTCCCAATGGACAAGAAGTTGCTGTCAAAAGGTTATCAACAAATTCAGGACAAGGAGATACAGAATTCAAAAACGAAGTGCAGTTAGTGGCCAAGCTACAGCATCGAAATTTAGTCAGGCTCCTTGGTTTCAGTTTGGAAAGAAAAGAAAGGTTACTAGTCTATGAGTTTGTTCCTAATAAAAGCCTTGATTACTTCATATTTGATCCAATCAAGCAAGCACATTTGGATTGGGAAATGCGGTATAAAATCATAAGAGGCATTGCCAAAGGCCTTCTTTATCTTCATGAAGATTCAAGACTGCGTATTGTTCATCGTGATCTCAAAGCAAGTAATATTCTCTTAGACGCAGAGATGAGCCCAAAGATATCAGATTTTGGAATGGCAAGATTGTTTGCTGTGGATCAAACTCAAGGAAACACTAGTAGAATTGTTGGAACTTATGGATATATGGCACCTGAGTATATAAGGCAAGGACAATTCTCAGTGAAGTCAGATGTCTTTAGTTTTGGCGTATTGGTTCTAGAGATTGTTAGTGGCCGAAAAAACAGTGGCTTCCATAATGGAGAGTATGTAGAGGATCTAATAAGCTTTGCCTGGAAAAACTGGAAAGAGGGAAATGCATTAAATCTTGTAGACGGTACATTAAATAAAGGTTCAAGAAATGAAATAATGAGATGCATCCATATTGGTTTACTATGTGTTCAGGAAAATTTAGCTGATAGACCAACCATGGCTTCTATTGTACTCATGCTTGATAGCCACTCTCTCACTCTCCCAGTACCCTCCGAACCTGCATTTTATATACCTAGCAGAGGTTTGTCAGATATTCAATCATGGGAGTATAATTCAGGGTCAACTGAATGA	1974	0.3961	MAPSRVISFLCLLVILISHTTSQPSFLYHYCMNDNGNYTANSAYQTNLNTLLSTLSSNKEIDYGFFNFSQGQNSDKVNAIGMCRGDVKPDVCRSCLNDSRILLTQRCPNQKEAIGWYDNCMLRYSNSSIFGVMEADPTYFLWDQNNATDMDQFNEVLRGLVDNLRSKAASGDSLKKYAAGSAAGPSFQTIFALLQCTPDLSEQQCNDCLVRAIADISSCCSGKISGRIGKPSCNLRFDTSPFYDSTLDNSPSSQVPPPFTNTTSTEGTCYVGKSNTTRIVIAVVVPIVAILVLVISVCFFLRGRKQRKNIDIDSKTNLQSTVFIAEVDNEIEPTETLQFNFDTIRMATNNFSETNMLGQGGFGPVYKGKLPNGQEVAVKRLSTNSGQGDTEFKNEVQLVAKLQHRNLVRLLGFSLERKERLLVYEFVPNKSLDYFIFDPIKQAHLDWEMRYKIIRGIAKGLLYLHEDSRLRIVHRDLKASNILLDAEMSPKISDFGMARLFAVDQTQGNTSRIVGTYGYMAPEYIRQGQFSVKSDVFSFGVLVLEIVSGRKNSGFHNGEYVEDLISFAWKNWKEGNALNLVDGTLNKGSRNEIMRCIHIGLLCVQENLADRPTMASIVLMLDSHSLTLPVPSEPAFYIPSRGLSDIQSWEYNSGSTE.	658

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca6g01564	657	ProSiteProfiles	Gnk2-homologous domain profile.	135	242	IPR002902	-
	Seca6g01564	657	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 10	24	129	-	-
	Seca6g01564	657	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	25	642	-	-
	Seca6g01564	657	Gene3D	-	136	242	IPR038408	-
	Seca6g01564	657	Gene3D	-	23	128	IPR038408	-
	Seca6g01564	657	FunFam	cysteine-rich receptor-like protein kinase 10	427	628	-	-
	Seca6g01564	657	SUPERFAMILY	Protein kinase-like (PK-like)	336	649	IPR011009	-
	Seca6g01564	657	ProSiteProfiles	Protein kinase domain profile.	351	627	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca6g01564	657	Gene3D	Transferase(Phosphotransferase) domain 1	427	628	-	-
	Seca6g01564	657	ProSiteProfiles	Gnk2-homologous domain profile.	26	129	IPR002902	-
	Seca6g01564	657	FunFam	Cysteine-rich receptor-like protein kinase 10	137	242	-	-
	Seca6g01564	657	Pfam	Protein tyrosine and serine/threonine kinase	354	619	IPR001245	GO:0004672\|GO:0006468
	Seca6g01564	657	CDD	STKc_IRAK	357	622	-	-
	Seca6g01564	657	FunFam	Cysteine-rich receptor-like protein kinase 10	313	426	-	-
	Seca6g01564	657	Pfam	Salt stress response/antifungal	31	126	IPR002902	-
	Seca6g01564	657	Pfam	Salt stress response/antifungal	145	239	IPR002902	-
	Seca6g01564	657	Gene3D	Phosphorylase Kinase; domain 1	313	426	-	-
	Seca6g01564	657	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	472	484	IPR008271	GO:0004672\|GO:0006468
	Seca6g01564	657	SMART	serkin_6	351	597	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca6g01564	Seca-Chr6	67092482	67095869	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca6g01564	1	640	Receptor kinase-like Gene Family	AT4G21410	51.376	0.0	632

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Seca6g01564		PK_Tyr_Ser-Thr	2.5e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca6g01564	-		-	gmx:102662291	1066.22