Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01563 AACGAGAAATTTGTATCACATAATATTATCTTGATTGTTGTCATTGTTATTGTTTTAATAATTCTCATCGGTTGTGTATTCTACTTCCTGATCAAGAAATCAAGGAAAAATAATACTCTTCTAAGGGAAAATTTTGGGGATGAAAGCACCACTTTGGAGTCGTTACAATTTTGTTTGGCTAGAATTGAAGATGCCACAAGAAAGTTTTCAAGAGAAAACAAAATTGGAGAAGGTGGATTTGGAGAGGGTATCCTTTTAGATGGACGAGAAATAGCTGTTAAAAAACTCTCACAAAGGTCAGGACAAGGTGTAGCGGAATTTAAGAATGAGATCGTACTAATAACCAAACTTCAACATAGAAATTTAGTGACCTTGCTAGGATTTTGCTTGGAAGAACAAGAGAAAATGCTTATTTATGAATTTGTGCCTAATAAGAGCCTTGATTACTTTCTATTTGATCCCCACAAGAGCAGACTATTGAATTGGTTCGAGCGTTACAAAATCATTGAAGGAATTGCACTAGGAGTTCTTTATTTACATGAATATTCACGGTTGAAAGTTATACATTGGGATCTTAAACCTAGTAATGTACTGTTAGATAACAATATGAATCCAAAGATCTCTGACTTTGGTATGGCAAGGATTGTTGCTATTGATCAAGATCGAGGAAATACAAATAGAATTGTAGGAACATTTGGTTATATGTCTCCTGAATATGCAATGCGTGGACAGTTTTCAAAAAAGTCAGATGTCTTTAGTTTTGGCATAATAGTTTTGGAGATAATTAGTGCAAAAAGGAATGCTCGTTCACTTTTACCAGATGATAAAGATGATGATGACCTCGCTTGGAGACAATGGAGAGATCAAACACCATTAGAACTATTAGACCAAGATATAAAAGAATCTTGCAATTTCAGTGAAGTCATTAAGTGCATCCAAGTCGGTTTGTTATGTGTGCAAGAGAAGCCAAATAATAGACCAACAATGGCAAAAGTTGTTTCATATCTCAGTAGCCCTTTAGCTGAGTTGCCATTTCCTGGAGAACCAACAAATTCTAAGCATAATGGAATAGTTCACAAGATGGTAGCAGGAGAGTCAAGTTCTGGTTCAGCATCATCAAAAAATGAAATGTCTATGAGTATATTGATTCCCCGATAG 1158 0.3506 NEKFVSHNIILIVVIVIVLIILIGCVFYFLIKKSRKNNTLLRENFGDESTTLESLQFCLARIEDATRKFSRENKIGEGGFGEGILLDGREIAVKKLSQRSGQGVAEFKNEIVLITKLQHRNLVTLLGFCLEEQEKMLIYEFVPNKSLDYFLFDPHKSRLLNWFERYKIIEGIALGVLYLHEYSRLKVIHWDLKPSNVLLDNNMNPKISDFGMARIVAIDQDRGNTNRIVGTFGYMSPEYAMRGQFSKKSDVFSFGIIVLEIISAKRNARSLLPDDKDDDDLAWRQWRDQTPLELLDQDIKESCNFSEVIKCIQVGLLCVQEKPNNRPTMAKVVSYLSSPLAELPFPGEPTNSKHNGIVHKMVAGESSSGSASSKNEMSMSILIPR. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01563 385 Pfam Protein kinase domain 70 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01563 385 MobiDBLite consensus disorder prediction 364 385 - -
Seca6g01563 385 Gene3D Phosphorylase Kinase; domain 1 31 141 - -
Seca6g01563 385 Gene3D Transferase(Phosphotransferase) domain 1 142 343 - -
Seca6g01563 385 FunFam cysteine-rich receptor-like protein kinase 10 142 343 - -
Seca6g01563 385 SUPERFAMILY Protein kinase-like (PK-like) 53 349 IPR011009 -
Seca6g01563 385 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 9 381 - -
Seca6g01563 385 SMART serkin_6 69 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01563 385 ProSiteProfiles Protein kinase domain profile. 69 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01563 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Seca6g01563 385 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 31 141 - -
Seca6g01563 385 MobiDBLite consensus disorder prediction 365 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01563 Seca-Chr6 67063629 67065381 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01563 47 385 Receptor kinase-like Gene Family AT4G11530 55.429 2.90e-126 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca6g01563 Pkinase 8.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01563 - - ccaj:109813299 530.406