LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca6g01558	ATGCTTCACTTGAGAAACCATCTCACCCTTTTTCTGCTCTTCTCTCTGTTCGGAATCAGATCATTACCCTCCTCAGCATCTCCGGTTTACAACTATAATTACTGTCCAAAAAACACAACCTACGAATCCAGCAGCACATTCCGAACTAATCTCGATGTCTTGTTCTCTTCTCTCATCTCCACCTCCCAAGCTTACAGTTCCTATTATTCATCAATGGGTTTAGGGACCCAAAACATCGCCAACGGGCAATACATGTGTCGCGGCGATGTCTCCTCTGCCACGTGTCAGGAGTGTGTGACGACAGGAACTAGAGAGATAAAACGGCTCTGTCCTAACAAAACAGAGTCCATAATTTGGTACGATGAGTGTCTGGTGGGCTACACAAGCCGCTACTTCGACTACACCGACATCGTTCCAGGAGTGAGGTTGTCGGATGACAAAAACATCTCTGACTCGGATTTGGAAAGTTTCAACAGAACGTTGTTTGGTTTGTTGGATCGTTTGGTTGAAGAAGCTGCGAGTTCACAGTCAGGGAAGAAATTCGCCACAGGGGATGCAGAGTTCGCTGCTCCTTTGCGGGTTTATGGGTTGGCGCAGTGCTTGCCGGATATGACGAAGGATCAGTGTGAGAAGTGTTTGCAAAATGCGATTGGAACTCTTACGGCTTGTTGTGGAGGAAAACAGGGTGCTAAGGCTCTGCTTGCGTGGTGTAATATCAGATATCAATTGTACCAGTTTTACAACACCACTGGGATATCGACTGCTTCAGGAAATAAAAAATCTTCATCACGAAAAATTGTCCTGATTGTGGTCTTTGTTGTTATTTCACTAATTCTCTTATGTTGTGTTGGGTATTTCCTACTGAGAAAATCAAGGAAGAATTATAAGACCCTTCTAAGGAAAAATTTTGGGGATGAAAGTGCCACTTTAGAGTCTTTACAATTCAGTTTGGCCATAATTGAAGCTGCCACAAAGAAGTTTTCAAGTGAAAACAAAATTGGAGAAGGTGGATTTGGAGAGGTTTACAAGGGTATTCTTTTAGATGGTCAAGAAATAGCTGTTAAAAGACTCTCACAGAAGTCCGGACAAGGTGAAATAGAATTCAAGAATGAGATTGTACTAATAGCCAAACTTCAACATAGAAACCTAGTAACTTTGCTAGGATTTTGCTTGGAAGAACAAGAGAAACTGCTTATTTATGAATTTGTGCCCAATAAGAGCCTTGATTACTTTTTATTTGATCCCCACAAGAGTAGATTGTTGAATTGGTCTGAGCGTTACAAAATTATTGAAGGAATTGCAAGAGGAATTCTTTATTTACATGAGCATTCACGATTGAAAGTTATACATCGTGATCTTAAACCTAGTAATGTACTGTTAGATGAAAGCATGAATCCAAAAATCTCCGACTTTGGTGTTGCAAGGATTGTTGCTATAGATCAAGATCGAGGAAATACAAATAGAATTGTGGGGACATTTGGGTATATGTCTCCAGAATATGCAATGCATGGACAATTTTCTGAAAAGTCAGATGTATATAGTTTTGGTGTCATAGTTTTGGAGACAATTAGTGCAAAAAAGAATGCTCGTTCTTTGTTATCCGATGATGATGATCTCTTAAGTTATGTGAGTATTGACATATAG	1644	0.4021	MLHLRNHLTLFLLFSLFGIRSLPSSASPVYNYNYCPKNTTYESSSTFRTNLDVLFSSLISTSQAYSSYYSSMGLGTQNIANGQYMCRGDVSSATCQECVTTGTREIKRLCPNKTESIIWYDECLVGYTSRYFDYTDIVPGVRLSDDKNISDSDLESFNRTLFGLLDRLVEEAASSQSGKKFATGDAEFAAPLRVYGLAQCLPDMTKDQCEKCLQNAIGTLTACCGGKQGAKALLAWCNIRYQLYQFYNTTGISTASGNKKSSSRKIVLIVVFVVISLILLCCVGYFLLRKSRKNYKTLLRKNFGDESATLESLQFSLAIIEAATKKFSSENKIGEGGFGEVYKGILLDGQEIAVKRLSQKSGQGEIEFKNEIVLIAKLQHRNLVTLLGFCLEEQEKLLIYEFVPNKSLDYFLFDPHKSRLLNWSERYKIIEGIARGILYLHEHSRLKVIHRDLKPSNVLLDESMNPKISDFGVARIVAIDQDRGNTNRIVGTFGYMSPEYAMHGQFSEKSDVYSFGVIVLETISAKKNARSLLSDDDDLLSYVSIDI.	548

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca6g01558	547	SUPERFAMILY	Protein kinase-like (PK-like)	309	529	IPR011009	-
	Seca6g01558	547	Gene3D	Transferase(Phosphotransferase) domain 1	403	545	-	-
	Seca6g01558	547	ProSiteProfiles	Gnk2-homologous domain profile.	29	132	IPR002902	-
	Seca6g01558	547	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	124	530	-	-
	Seca6g01558	547	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	448	460	IPR008271	GO:0004672\|GO:0006468
	Seca6g01558	547	ProSiteProfiles	Gnk2-homologous domain profile.	137	246	IPR002902	-
	Seca6g01558	547	Pfam	Salt stress response/antifungal	35	128	IPR002902	-
	Seca6g01558	547	Pfam	Salt stress response/antifungal	153	243	IPR002902	-
	Seca6g01558	547	FunFam	Lectin-domain containing receptor kinase A4.3	403	543	-	-
	Seca6g01558	547	ProSitePatterns	Protein kinases ATP-binding region signature.	333	355	IPR017441	GO:0005524
	Seca6g01558	547	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	288	402	-	-
	Seca6g01558	547	Pfam	Protein kinase domain	328	526	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca6g01558	547	SMART	serkin_6	327	543	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca6g01558	547	Gene3D	Phosphorylase Kinase; domain 1	290	402	-	-
	Seca6g01558	547	Gene3D	-	141	246	IPR038408	-
	Seca6g01558	547	Gene3D	-	28	132	IPR038408	-
	Seca6g01558	547	ProSiteProfiles	Protein kinase domain profile.	327	547	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca6g01558	547	FunFam	Cysteine-rich receptor-like protein kinase 10	140	246	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca6g01558	Seca-Chr6	66895329	66900256	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca6g01558	4	543	Receptor kinase-like Gene Family	AT4G05200	46.914	3.02e-174	507

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Seca6g01558		Pkinase	6.2e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca6g01558	-		-	ccaj:109813299	738.028