Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01557 ATGGAACGCTACTTAGCTACCAAATACCATGTCTTGCTTTATCTGGCGTTCCATTTTTCCCTTCTCAAATATTCCTATTCCTCAGAGGCCTTACATCTCTACCGTTGCTCATCCACCAAAACATTCACAGCCAATAGCCCTTACCAGTTCAACCTGGACACTCTTCTAGCATCTCTCTCTTCCGCCGTCACTAATAATAAGGAGTTCCACTTCTACAACACCACAGCCGGTGGCAGAAACTCCCTTGACACCGTCTACGGCCTTTACATGTGCCGTGGTGACGTACCCTATGAGGTGTGTCGAGATTGCGTAGTAAAAGGAACCCCAAAACTAGCCTCAGTGTGCGAGTTCGTGAAAGAAGGTATAATATGGTATGACGAGTGCTTCATTCGCTATTCCAATCGCTCTTTCTTCTCCTCAATAGATGAACAGCCTAGAATTGGCATTTTTAATACAATGAACATAACAACCACAAAAAGTAGCAATAACACGGGCTTCACTTGGACACTGGCAAACACGTTGAGTCAAGTGGTGGCCGAGGCAGCCAATAGTAGCAATAAGTTTGCAACGAAAAAGGTCGCGATTTTGATTGCTGAGTCTGACGCGCTTTACAGTCTTGCTGAATGCACGCCGGATCTGTCGTCACAAGATTGTGACACGTGTCTGCGTGATGCAATGAGTGATGTGCCGTGGTGTTGTATGGGAAAGGCTGGGGGAAGAGTTGTGTATCCTAGCTGCACATTAAGGTTTGAATTGTTCCAGTTTTACTGGGATACAACGGAAACTTCTCTGGCAAAGTCGCCTCTTCAAGGCACCCCTTTTAGCTCAGGGGTCACAGAAAATGGAAAAAGGAGTTCGCGAACAGTTATTTTAGTTGTTGCCCCTTTTGTTGTTTCGGTGACACTCTTTGCGTTTTGCTACTACTATTTGCTAAGGAGAAAGGCAAGAAAAAGCAGCTGTGAGACTCTTCTAAAAGAAAACTTTGGTCGTGAAAGTTCAACTTTGGAAGGGTTGCAATTCAATTTGGCTATAATTGAAGCATCAACCAACAATTTTTCACTTGAGAATAGAATCGGAAAAGGTGGATTTGGAGAAGTTTACAAGGGCATTCTTTCTTATGGACGACATATAGCTGTAAAAAGACTTTCAACAAGCTCTAAGCAAGGTTCAATTGAATTCAAAAATGAGATTTTATTGATAGCCAAGTTACAACATAGAAATCTTGTGGCATTGATAGGTTTTTGCCTAGACGAACAAGAGAAGATTCTTATTTATGAATACATGCAAAATGGGAGCCTCGACAAATTTTTTTTTGGTTTGAAACCTCAATCGAAGTTAAGTTGGCCTGAGCGTTACAAAATTATAGGAGGAATTTCTCTTGGGATTCTTTATTTACATGAATATTCTCGGCTTAAAGTTATACATCGAGATCTTAAACCTAGTAATGTTTTACTAGATGAAAATATGAATCCAAAGATATCAGACTTTGGCATGGCTAGAATTATTGAAATAGAACAAGATCGTGGAAAAACTAATAGAATTGTTGGAACATATGGTTATATGTCTCCAGAATATGCAATGTTTGGACATTTTTCTGAAAAGACAGATGTTTTTAGTTTTGGAGTCATGGTTCTAGAAATCATTACTGGACAAAGAAATATGAATTCTTATGACTCAGACCATGTTGCAGATGGCCTCATAAGTTATGTTTGGAAACAATGGAATGATCAAACACCACTAAACATATTGGACCCGAGTATGAAAGAAAATTATTCTCAAGTTGAAATTATTAAGTGTATTCATATTGGTTTATTATGTGTTCAAGAAAATCAAACTGCTAGACCAACAATGTCAACAGTTGTCTCATATCTTAAGAGTCATTCCCTTGAATTGCCATCTCCACAAGAACCAACATTTTTCTTGCATGGTAGAATGGATCAAAGAGTAGCTACACATCAAGCATCCAGTTGTAGTCAACTTGCCAATTACGCCATGCCATTGTCTGTCAATGAGATGTCTATAAGTAACTTTTATCCAAGATAG 2043 0.3935 MERYLATKYHVLLYLAFHFSLLKYSYSSEALHLYRCSSTKTFTANSPYQFNLDTLLASLSSAVTNNKEFHFYNTTAGGRNSLDTVYGLYMCRGDVPYEVCRDCVVKGTPKLASVCEFVKEGIIWYDECFIRYSNRSFFSSIDEQPRIGIFNTMNITTTKSSNNTGFTWTLANTLSQVVAEAANSSNKFATKKVAILIAESDALYSLAECTPDLSSQDCDTCLRDAMSDVPWCCMGKAGGRVVYPSCTLRFELFQFYWDTTETSLAKSPLQGTPFSSGVTENGKRSSRTVILVVAPFVVSVTLFAFCYYYLLRRKARKSSCETLLKENFGRESSTLEGLQFNLAIIEASTNNFSLENRIGKGGFGEVYKGILSYGRHIAVKRLSTSSKQGSIEFKNEILLIAKLQHRNLVALIGFCLDEQEKILIYEYMQNGSLDKFFFGLKPQSKLSWPERYKIIGGISLGILYLHEYSRLKVIHRDLKPSNVLLDENMNPKISDFGMARIIEIEQDRGKTNRIVGTYGYMSPEYAMFGHFSEKTDVFSFGVMVLEIITGQRNMNSYDSDHVADGLISYVWKQWNDQTPLNILDPSMKENYSQVEIIKCIHIGLLCVQENQTARPTMSTVVSYLKSHSLELPSPQEPTFFLHGRMDQRVATHQASSCSQLANYAMPLSVNEMSISNFYPR. 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01557 680 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 312 427 - -
Seca6g01557 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Seca6g01557 680 SUPERFAMILY Protein kinase-like (PK-like) 337 651 IPR011009 -
Seca6g01557 680 SMART serkin_6 352 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01557 680 Gene3D Transferase(Phosphotransferase) domain 1 428 633 - -
Seca6g01557 680 CDD STKc_IRAK 358 625 - -
Seca6g01557 680 ProSiteProfiles Gnk2-homologous domain profile. 30 137 IPR002902 -
Seca6g01557 680 FunFam Cysteine-rich receptor-like protein kinase 25 149 255 - -
Seca6g01557 680 Gene3D - 29 137 IPR038408 -
Seca6g01557 680 Gene3D - 149 255 IPR038408 -
Seca6g01557 680 Pfam Protein kinase domain 353 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01557 680 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 29 137 - -
Seca6g01557 680 ProSiteProfiles Gnk2-homologous domain profile. 148 255 IPR002902 -
Seca6g01557 680 FunFam cysteine-rich receptor-like protein kinase 10 428 631 - -
Seca6g01557 680 Gene3D Phosphorylase Kinase; domain 1 314 427 - -
Seca6g01557 680 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Seca6g01557 680 ProSiteProfiles Protein kinase domain profile. 352 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01557 680 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 33 676 - -
Seca6g01557 680 Pfam Salt stress response/antifungal 158 251 IPR002902 -
Seca6g01557 680 Pfam Salt stress response/antifungal 36 134 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01557 Seca-Chr6 66821054 66826249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01557 8 680 Receptor kinase-like Gene Family AT4G05200 45.588 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca6g01557 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01557 - - gmx:100792162 752.281