Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01550 ATGGGAGGTTACTCTGCTAATCCCGCCGACTACAAGCTTCTAGAAGAAGTTGGTTATGGCGCCACCGCCACCGTTTACAGGGCGATCTATCTTCCTTTCAACCAACTTGTCGCTATCAAGTGTTTGGATCTCGATCGCTGCAATACCAATAATGATGATATACGTAGGGAGACTCAAACGATGAGTTTGATTGATCATCCGAACGTTGTGAGGGCTTACTGTTCCTTTGCGGTGGAACGGAGTCTTTGGGTGGTGATGCCATTCATGGATGAGGGTTCTTGCTTGCACCTCATGAAGATAGCTTACACTGACGGATTTGAAGAGGACGCAATTGGATCGATCCTCAAAAAAACTCTCAAGGCCTTGGATTATCTTCATCAACAGGGTCATATTCATCGAGATGTCAAGGCTGGTAACATTTTACTTGATAGCAATGGAACCGTGAAGCTTGCTGACTTTGGTGTTTCGGCTTGCATGTTTGACACTGGCGAGAGACAGCGTTCAAGGAATACTTTTGTAGGGACTCCTTGCTGGATGGCTCCAGAGGTACTACAACCGGGAAGTGGTTATAATTCCAAGGCTGATATTTGGTCGTTTGGAATTACGGCACTGGAACTGGCTCATGGTCATGCACCATTTTCAAAATATCCCCCAATGAAGGTTCTTCTGATGACCATACAGAATGCCCCTCCTGGACTTGATTATGATCGTGATAAAAAGTTTTCTAAGTCATTTAAGGAAATGGTTGCCATGTGCTTGGTGAAAGATCAAACAAAGAGACCATCAGCAGAGAAGTTACTAAAACTTCCCTTCTTCAAAAATGCTAAACCTCCTGAGCTCTCTGTAAAGAAATTGTTTGCTGACTTACCACCTCTTTGGAATCGTGTAAAAGCCCTCCAGCTTAAAGATGCAGCACAACTAGCACTGAAGAAAATGCCTTCTGCAGAACAAGAAGCAATATCTCAGAGTGAATACCAGCGAGGAGTTAGCGCATGGAACTTTGACATTGATGATTTGAAAGCTCAAGCTTCATTGATGAGGGATGATGATGATATGGTAGAGATGAGGGAGGAAGATGAAAACAATTTTTTTACCAATTACAAGGCTGGTACAACTGATTCCCAATTTGGTGTTGGCGAAACGAATTCAGAGAAATTACCACAGGATAAGATCACATCACAAATAGGTGGTATTGACATACAACAGACTGAACAGAGTGAATACTTGAACAAAAAGGAGAAGGTTCTTGAAAGTGATCTCCAGGAACCTGTATTACCCAAAAATATTATTTGGAAGAGAAATGGATCATTTACAGAGGCAACAACATCCACGGTAGACAAAGATATAGGTACAAGCAAGGTTAAAGCTCATTCTGTGAAAAATCGTCAAACCCAAAGTGGGCCGTTGGTGCCTGGCACAGTTCTCAGTTATTCTTCCTCAGAAAGAGGCCGTACATTTGAAAGGTATGCTGTACTTTTATATCATCTCTTCTTGCTTGAGAATGGAAATCAGTTACCAAGTGAGAAAAATAATCGGGAAGTACGACGAGCTCCAAGTTTTAGTGGTCCTTTGATGCTTCCAACTCGAGCTTCAGCAAATAGTTTATCTGCTCCAATAAAGTCTTCTGGAGGATTCAGAGATTCATTGGACGACAAGTCTAAGGCTAATCTAGTGCAAATTAAAGGGCGATTCTCTGTGACATCAGAAAATTTAGATCTTGTGAAGGATATTCCTTTAAGTTCAGTTTCACGCCGATCTTCACAGGGATCACCGCTGCGGAAATCTGCCAGTGTTGCTGATTGGATGCTGGATTCCAAACAAATGCCAATTGGTCAGGCTCCTAAAGATTCTGCTGTCACTAATTTCTCTGCTTCACTTCTTACGCCTCACCTTCAAAATCTTTTCCAGCAAACATCTATTCAACAGGATCTTATAATGAATCTGTTAAATAGCTTGCAACCTGCTGAAGCAACTGACATTTCTCAGAATGGAAAGTTACCACCACGACCTCGCAGTCCAGAAATCAATGGAAATGTTGATACAGCAGCTTCAGACAGGGAACGTCTTCTCCTGGCCAAAGTTGCAGAGCTTCAGGCTCGGATGATCAATTTGACCGATGAATTGACTGCTGAGAAGTTAAAATACATGCAGTTGCAACAACAGCTCACAGCTCTCTGCAGTCAGGATCAAAACGGGGACGGGAGAGAGGAAGTTGCATGA 2220 0.427 MGGYSANPADYKLLEEVGYGATATVYRAIYLPFNQLVAIKCLDLDRCNTNNDDIRRETQTMSLIDHPNVVRAYCSFAVERSLWVVMPFMDEGSCLHLMKIAYTDGFEEDAIGSILKKTLKALDYLHQQGHIHRDVKAGNILLDSNGTVKLADFGVSACMFDTGERQRSRNTFVGTPCWMAPEVLQPGSGYNSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQTKRPSAEKLLKLPFFKNAKPPELSVKKLFADLPPLWNRVKALQLKDAAQLALKKMPSAEQEAISQSEYQRGVSAWNFDIDDLKAQASLMRDDDDMVEMREEDENNFFTNYKAGTTDSQFGVGETNSEKLPQDKITSQIGGIDIQQTEQSEYLNKKEKVLESDLQEPVLPKNIIWKRNGSFTEATTSTVDKDIGTSKVKAHSVKNRQTQSGPLVPGTVLSYSSSERGRTFERYAVLLYHLFLLENGNQLPSEKNNREVRRAPSFSGPLMLPTRASANSLSAPIKSSGGFRDSLDDKSKANLVQIKGRFSVTSENLDLVKDIPLSSVSRRSSQGSPLRKSASVADWMLDSKQMPIGQAPKDSAVTNFSASLLTPHLQNLFQQTSIQQDLIMNLLNSLQPAEATDISQNGKLPPRPRSPEINGNVDTAASDRERLLLAKVAELQARMINLTDELTAEKLKYMQLQQQLTALCSQDQNGDGREEVA. 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01550 739 Coils Coil 687 721 - -
Seca6g01550 739 MobiDBLite consensus disorder prediction 659 679 - -
Seca6g01550 739 Gene3D Phosphorylase Kinase; domain 1 2 88 - -
Seca6g01550 739 CDD STKc_OSR1_SPAK 10 272 - -
Seca6g01550 739 Pfam Protein kinase domain 11 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01550 739 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 4 712 IPR047173 GO:0043539
Seca6g01550 739 ProSiteProfiles Protein kinase domain profile. 11 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01550 739 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Seca6g01550 739 FunFam Serine/threonine-protein kinase BLUS1 1 88 - -
Seca6g01550 739 FunFam serine/threonine-protein kinase BLUS1-like isoform X2 92 322 - -
Seca6g01550 739 Gene3D Transferase(Phosphotransferase) domain 1 92 323 - -
Seca6g01550 739 SMART serkin_6 11 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g01550 739 SUPERFAMILY Protein kinase-like (PK-like) 10 327 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01550 Seca-Chr6 66654285 66662182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01550 3 730 MAP Kinase Kinase Kinase Kinase AT4G24100 64.521 0.0 919
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Seca6g01550 Pkinase 1.9e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01550 - - gmx:100809903 1144.8