Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01547 ATGGATGATGATATTCAAGAAGCGTCAGATTCTGAGAAACCGTTGAAAAAGATAGAGAAGTTGAACTCTTCACCTTCTGAGTTTTGTAAAGCTAGTGATAAAGTAAAGGGTGATGAAGAAGATATTTCTACAAGCAAGAAAGCAGCATCATCATCAGGAGTCCACCCGTGCGAGTTTTGTGACAAGGTTTTCAACTCTGAAAAAGCACTAGGTGGCCGCAAAAGACTCCACTTTCAAGCTCAAAGGAAAGAGGCTCATAATAATAACAATAATGAGATGCAGTCATGTGATAATAAATTGATCAAATGTTGTGTTTGCAAGAAGGATTTTCCAACTGAAAAGTCATTGCATGGCCATTTGAGATCCCACCCTGAAAGGTTTTGGAGGGGTGTTCACCCTCCTGAACCACCATCTCACAACCAAAATTCTTTGGAAGAGAATAATGATAAAGAAGATAATGGTGGCCAAATTTCAAGTGTAACAACGGAAGCAGCTATTGATATATCAAAGTATTTGCCACTAAGTTGGAAGAAGACCGATAAAAGAGGTCGGGCATGTACTTATAGCAAAGAGGATATTAATGCTGCCCAAATACTTATGTTCATGTCTCGAGATTATAAGAGGTCACATTTAGTGGTGAATCCTAACTTTTCTCAACATCCCAACCTCAATGAGAATGGTGATGAGTGTGATAAGAATAATGGAGAGAAGAGTATGAAGGATGAGGTAATAGGTAGTGAGTTGCATGATCAAATGGTTGTAATAATGAATAAGAAGATTTATAAGAAAATCAAGTTACTGGTGAAATTGAAGAATCCAAATGAAGAATCTGAAGAGAAGATCTTGCATGTACCAGAAGATGACAATGAAGAAGAAAGTCAAGAAGAAAGTTAA 894 0.3725 MDDDIQEASDSEKPLKKIEKLNSSPSEFCKASDKVKGDEEDISTSKKAASSSGVHPCEFCDKVFNSEKALGGRKRLHFQAQRKEAHNNNNNEMQSCDNKLIKCCVCKKDFPTEKSLHGHLRSHPERFWRGVHPPEPPSHNQNSLEENNDKEDNGGQISSVTTEAAIDISKYLPLSWKKTDKRGRACTYSKEDINAAQILMFMSRDYKRSHLVVNPNFSQHPNLNENGDECDKNNGEKSMKDEVIGSELHDQMVVIMNKKIYKKIKLLVKLKNPNEESEEKILHVPEDDNEEESQEES. 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01547 297 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Seca6g01547 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 137 IPR013087 -
Seca6g01547 297 MobiDBLite consensus disorder prediction 126 156 - -
Seca6g01547 297 Gene3D Classic Zinc Finger 53 123 - -
Seca6g01547 297 MobiDBLite consensus disorder prediction 31 45 - -
Seca6g01547 297 MobiDBLite consensus disorder prediction 1 54 - -
Seca6g01547 297 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 82 205 - -
Seca6g01547 297 Pfam C2H2-type zinc finger 54 72 - -
Seca6g01547 297 Pfam C2H2-type zinc finger 102 125 - -
Seca6g01547 297 MobiDBLite consensus disorder prediction 274 297 - -
Seca6g01547 297 SUPERFAMILY beta-beta-alpha zinc fingers 54 123 IPR036236 -
Seca6g01547 297 SMART c2h2final6 101 123 IPR013087 -
Seca6g01547 297 SMART c2h2final6 55 77 IPR013087 -
Seca6g01547 297 MobiDBLite consensus disorder prediction 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01547 Seca-Chr6 66582815 66587085 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01547 55 142 C2H2 Transcription Factor Family AT2G26940 33.628 8.50e-13 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca6g01547 zf-C2H2_6 8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01547 - - cam:105851665 138.658