Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01545 ATGGATTCTGAAGATCAAAAAATTAAGCTGGATGATGAGTTACATCATGATGATGATAATCAAGAAGGGTCAGATTCTGAGAAACCGTTGAAAAAGATAGAGAAGTTGAACTCTTCACCTTCTGAGTTTTGTAAAGCTAGTGATAAAGTAAAGGGTGATGAAGAAGATATTTCTACAAGCAAGAAAGCAGCAACATCATCAGGAGTCCACCCGTGCGAGTTTTGTGACAAGGTTTTCAGCTCTGGAAAAGCACTAGGTGGCCACAAAAGACTCCACTTTCAAGCTCAAAGGAAAGAGGCTCATAATAATAACAATAATGAGATGAAGTCATGTGATAATAAATTGATCAAATGTTGTGTTTGCAAGAAGGATTTTCCAACTGAAAAGTCATTGCATGGCCATTTGAGATCCCACCCTGAAAGGTTTTGGAGGGGTGTTCACCCTCCTGAACCATCATCTCACAACCAAAATTCTATGGAAGAGAATAATGATAAAGAAGATAATGGTGGCCAAATTTTAAGTGTAACAACGGAAGCAGCTATTGATATATCAAAGTATTTGCCACTAAGCTGGAAGAAGACCGATAAAAGAGGTCGGGCATGTACTTATAGCCAAGAGGATATTAATGCTGCCCAAATACTTATGTTCATGTCTCGAGATAATAAGAGGTCACATTTAGTGGTGAATCCTAACTTTTCTCAACATCCCAACCTCAATGAGAATGGTGATGAGTGTGATAAGAATAATGGAGAGAAGAGTATGAAGGATGAGGTAATAGGTAGTGAGTTGCATGATCAAACGATTATAATAATGAATAAGAACATTTATAAGAAAATCAAGTTACTGGTGAAATTGAAGGATCCAAATGAAGAATCTGAAGAGAAGATCTTGCATGTACCAGAAGATGACAATGAAGAAGAAAGTCAAGAAGAAAGTCAATCAGGTCTACGAATTCACGATTTTGATTTGAACGAGCCAGCAAATGATACGGAAAAGGAAACAAACTAG 1008 0.372 MDSEDQKIKLDDELHHDDDNQEGSDSEKPLKKIEKLNSSPSEFCKASDKVKGDEEDISTSKKAATSSGVHPCEFCDKVFSSGKALGGHKRLHFQAQRKEAHNNNNNEMKSCDNKLIKCCVCKKDFPTEKSLHGHLRSHPERFWRGVHPPEPSSHNQNSMEENNDKEDNGGQILSVTTEAAIDISKYLPLSWKKTDKRGRACTYSQEDINAAQILMFMSRDNKRSHLVVNPNFSQHPNLNENGDECDKNNGEKSMKDEVIGSELHDQTIIIMNKNIYKKIKLLVKLKDPNEESEEKILHVPEDDNEEESQEESQSGLRIHDFDLNEPANDTEKETN. 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01545 335 SUPERFAMILY beta-beta-alpha zinc fingers 69 138 IPR036236 -
Seca6g01545 335 MobiDBLite consensus disorder prediction 141 169 - -
Seca6g01545 335 MobiDBLite consensus disorder prediction 288 335 - -
Seca6g01545 335 MobiDBLite consensus disorder prediction 232 252 - -
Seca6g01545 335 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Seca6g01545 335 ProSitePatterns Zinc finger C2H2 type domain signature. 118 138 IPR013087 -
Seca6g01545 335 MobiDBLite consensus disorder prediction 310 335 - -
Seca6g01545 335 MobiDBLite consensus disorder prediction 46 60 - -
Seca6g01545 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 97 IPR013087 -
Seca6g01545 335 SMART c2h2final6 70 92 IPR013087 -
Seca6g01545 335 SMART c2h2final6 116 138 IPR013087 -
Seca6g01545 335 Pfam C2H2-type zinc finger 117 140 - -
Seca6g01545 335 Pfam C2H2-type zinc finger 69 92 - -
Seca6g01545 335 Gene3D Classic Zinc Finger 68 138 - -
Seca6g01545 335 MobiDBLite consensus disorder prediction 288 302 - -
Seca6g01545 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 138 IPR013087 -
Seca6g01545 335 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 105 330 IPR044653 GO:0003700
Seca6g01545 335 MobiDBLite consensus disorder prediction 1 67 - -
Seca6g01545 335 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01545 Seca-Chr6 66577986 66579083 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01545 70 152 C2H2 Transcription Factor Family AT2G26940 36.111 1.59e-15 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca6g01545 zf-C2H2_6 9.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01545 - - cam:105851665 159.844