Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01524 ATGATTGGCGTTTCCTCAAACGCGATTCAACAGCGTCTCCAATTCATTGTGCAGAACAGTCCTGAATGGTGGGTGTACGCAATCTTTTGGCAACCTTCCAAAGACGGTGTTAAATTAGAATGGGGCGATGGCTACTTTCGTGGTGGAAAAGCCAAAGTAGAAAAGGAAAGCGCATCAGAGAGAGGTGTGCATGACATTGAGTGGTTCTACACGGTGTCGCAAACTCGCTCATTTGGCTCTTTGGATGGTGTCATTGGGCATGCGTTTAGTTCAGGAGCAGATGTTTGGTTAAGCGGAATGAACGAGTTTCAATTAAACGACTGTGATCGAGTTAGAGAAGCTCGTAATCATGGGATCCATACTTTGGTCTGCGTTTCAACAATAACCGGTGTCGTTGAGCTTGGTTCGTGTGACACGTTCAACCTCGATTACGCCTTGCTGCAGATGGCTAAATCAGTGTTTGAAAATAATAACCAAGATCATCAAAATCCACAGAGCAACAGAGACAAAAACAAGCTCAAGCAGAAACAAAGAAAGGAGTTATTAGATGATGAAGCTTCCTCTGACACGTCAGATACTGAGGCTCCTTTTGCCTTTGCTGAAACGAACAATAATGTTCCAACAATGATTAGAAGGAGAGCGAATCAATTGCCTCAGAATCACGTCGAGGCTGAGAGGCAGAGACGAGAGAAATTAAATCAAAGATTCTATGCTCTCCGTTCTGCAGTTCCAAACGTGTCTAGAATGGACAAAGCATCTTTACTTTCCGACGCGGTTGCGTACATCAATGAACTCAAGGCCAAAATTAATGAACTGGAAAACAGATCAGAGAGCCATGGCGAGAGATCCAAGCAAGAAACTGTTGTAAAAACCATGCATTGCTCAAGCTCTGCTACAACTACAATGGGAATTGAAGTGAAGATCTTTGGGACAGAGGCAATTATAAGAGTGCAGAGCCTAAACGTGAATCACCCTCCTGCAAGGTTAATGGATGCTCTAAGAGATCTTCAGTTGCCAATTCTCCATGCCACCATGTCAAACATCAAAGAGATGATGCTTCAAGACGTCGTCGTTCGGGTTCCTCATGACCTCATGACTGAAGAAGCCATGAAAAATGCCATTATTCAAAGACTTTGA 1137 0.4371 MIGVSSNAIQQRLQFIVQNSPEWWVYAIFWQPSKDGVKLEWGDGYFRGGKAKVEKESASERGVHDIEWFYTVSQTRSFGSLDGVIGHAFSSGADVWLSGMNEFQLNDCDRVREARNHGIHTLVCVSTITGVVELGSCDTFNLDYALLQMAKSVFENNNQDHQNPQSNRDKNKLKQKQRKELLDDEASSDTSDTEAPFAFAETNNNVPTMIRRRANQLPQNHVEAERQRREKLNQRFYALRSAVPNVSRMDKASLLSDAVAYINELKAKINELENRSESHGERSKQETVVKTMHCSSSATTTMGIEVKIFGTEAIIRVQSLNVNHPPARLMDALRDLQLPILHATMSNIKEMMLQDVVVRVPHDLMTEEAMKNAIIQRL. 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01524 378 SMART finulus 222 271 IPR011598 GO:0046983
Seca6g01524 378 MobiDBLite consensus disorder prediction 157 195 - -
Seca6g01524 378 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 154 IPR025610 -
Seca6g01524 378 Coils Coil 255 282 - -
Seca6g01524 378 Pfam Helix-loop-helix DNA-binding domain 219 265 IPR011598 GO:0046983
Seca6g01524 378 PANTHER MYC 6 377 IPR045084 GO:0003700|GO:0006355
Seca6g01524 378 Gene3D - 209 281 IPR036638 GO:0046983
Seca6g01524 378 MobiDBLite consensus disorder prediction 165 186 - -
Seca6g01524 378 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 216 281 IPR036638 GO:0046983
Seca6g01524 378 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 216 265 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01524 Seca-Chr6 65925526 65926704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01524 9 378 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 35.280 2.18e-62 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca6g01524 bHLH-MYC_N 9.1e-34 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01524 - K13422 gmx:100777730 440.269