Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01493 ATGCTCGTGATGCTGCATTCTTTAGCCCGTCAAAAGAAAGCTGTGAAGATTTTCCCCAGGCCTACTGCTGGACCTCTTAGGCCTATTGTTCATGGACAAACCTTGAAATACAACATGAAAGTCAGAGATGGTAGAGGATTTTCTCTTGAAGAGCTGAAGGCTGCTGGTATTCCCAAAAAGCTTGCTCCAACTATTGGCATTGCTGTTGATCATCGCCGCAGGAACCGTTCATTGGAAAGCCTGCAAGCTAATGTGCAGAGGCTGAAAACATACAAGGCCAAGTTGGTTGTCTTCCCAAGACGTGCACGCAAGGTTAAGGCTGGTGATTCTACGCCTGAGGAACTTGCAAATGCCACACAAGTCCAGGGTTCATACTTGCCCATTGTGAGGGAGAGGCCATCTGTAGAGCTTGTTAAGGTTACAGATGAAATGAAGGAGTTTAAAGCTTATTACAAGCTTCGGCTTGAACGGACAAACAAACGCCATTATGGTGCTAGACTGAAGAAGGCTGCTGAAGCAGAAAAGGAAGAGAAGAAGTAA 540 0.4593 MLVMLHSLARQKKAVKIFPRPTAGPLRPIVHGQTLKYNMKVRDGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLESLQANVQRLKTYKAKLVVFPRRARKVKAGDSTPEELANATQVQGSYLPIVRERPSVELVKVTDEMKEFKAYYKLRLERTNKRHYGARLKKAAEAEKEEKK. 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01493 179 FunFam 60S ribosomal protein L13 138 179 - -
Seca6g01493 179 Pfam Ribosomal protein L13e 8 157 IPR001380 GO:0003735|GO:0005840|GO:0006412
Seca6g01493 179 Hamap 50S ribosomal protein L13e [rpl13e]. 17 100 IPR001380 GO:0003735|GO:0005840|GO:0006412
Seca6g01493 179 ProSitePatterns Ribosomal protein L13e signature. 42 56 IPR018256 GO:0003735|GO:0005840|GO:0006412
Seca6g01493 179 PANTHER 60S RIBOSOMAL PROTEIN L13 8 179 IPR001380 GO:0003735|GO:0005840|GO:0006412
Seca6g01493 179 Gene3D - 139 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01493 Seca-Chr6 65110421 65111725 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01493 8 164 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 85.987 1.31e-99 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01493 K02873 - gmx:100805957 302.367