Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01480 ATGAATGCTTCTCATTATGAGCCTTTATCTGTAGAAAATGACAATGTTTGGTCATTGATTCCTGAGCTCAGTAAGAAGATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAGAATATTACAGGGTCAACACAACCAACACTTATGGAAGAAAAATCTGAAAGAAGAGGTGGTTGTATGATATCTCATACTCCTGGAGCTGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAAGCTATTCCTAGATAAAAAGCCTCTCATCCTTGCTCCAAAAACTACACTATATACTTGGTATAAGGAATTCAGCAAGTGGGAGATTCCTATTCCAGTGTATCTGATTCGTGGTCGTAAAAGCCTGAGAGATTTTGATAAAACACCATTGACTATTCCTGGAGTTCCAAACCAAACTGGTGATGTCAAGCATGTTTTGGATTGCCTTGAAAAGATTAAAAAGTGGCATCTACACCCTAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACAAGAGAGAATTCAAAGTATGAACATAAGAAGTATATGGCTAAAGCTTTGAGAGAAAGCACTGGGATCCTGGTACTCGATGAAGGGCAAAATCCTAGAAGCACTAGGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAAAACTGAGAATATTACTTTCAGGCACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCGAAGTTTGTTCAAGTAGTGCTGAAAGAATTAGATACAAAACAAAATATGGGAAATGATAAAAATCCAGATAAAGCAAAACATTTACTTGAGACACGTGCTAGGAAATTCTTCCTAAATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGTGAGGATGCAAGGTTTGAACATGTTGAGGAAAACCACAAGTGCTTTTATAGATGTTTATGAGAGTAGGAATTCTGACAAGCTTCCTGGTTTGCAAATTTATACTCTGCTTAAGAACCTAACTGATATGCAGAATGAGCTTTTGCAGAAACTACAAAAGAAAATGGTTGGGTCAAGCGTGTTTCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTTCAAAGAAGTTTTACACTTCAGAGGAACTAAACCATCTAGATAAGTTCAAGTTTGATTTCAGGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCATTCATGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCGACCTTGAACCTATGAAGCTTTTAGTACAATTGTTTGAGGAGTGCTTCAAATGGAAAAAGGGTGGAGAAATTTTGTTACTTTATGGGGAACAACACCTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAAGTACTCATTGCTTCAATTACAGCTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCGGAGTGGAATCCATTGAAGATAAAGCAGGCTATTGCAAGGGATTTTCATCCTGGCCAAGAAAAGATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAGTGGTTTTCCAACATGATTTTCAGTGAGGATTTTGCGGAGAACCCTTCCCAGTGGCAAGCGGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTGAGAATGACAATCCTAAAGCAATCCATATGATCATGAAGAATGAAAAAGCTTCAACAAACTGA 1824 0.3799 MNASHYEPLSVENDNVWSLIPELSKKMHDHQKKGFQFIWQNITGSTQPTLMEEKSERRGGCMISHTPGAGKTFLVIAFLVSYLKLFLDKKPLILAPKTTLYTWYKEFSKWEIPIPVYLIRGRKSLRDFDKTPLTIPGVPNQTGDVKHVLDCLEKIKKWHLHPSVLVMGYTSFLSLTRENSKYEHKKYMAKALRESTGILVLDEGQNPRSTRSRLRKGLMKVETKLRILLSGTLFQNNFGEYFNTLCLARPKFVQVVLKELDTKQNMGNDKNPDKAKHLLETRARKFFLNDIANKIDSSDDEVRMQGLNMLRKTTSAFIDVYESRNSDKLPGLQIYTLLKNLTDMQNELLQKLQKKMVGSSVFPLEGELMVTLGSIHPWLIKTATSSKKFYTSEELNHLDKFKFDFRVGSKVRFILSLIIHVVKEEKVLIFCRDLEPMKLLVQLFEECFKWKKGGEILLLYGEQHLFERGKVIDKFEDPCGVSKVLIASITACAEGISLTAASRLIFLDSEWNPLKIKQAIARDFHPGQEKMVYVYQLLAKGSMEEDKYRRTTWKEWFSNMIFSEDFAENPSQWQAEKIEDDILREMVENDNPKAIHMIMKNEKASTN. 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01480 607 CDD SF2_C_SNF 402 538 - -
Seca6g01480 607 Gene3D - 330 607 IPR027417 -
Seca6g01480 607 Pfam Helicase conserved C-terminal domain 410 522 IPR001650 -
Seca6g01480 607 SMART helicmild6 438 524 IPR001650 -
Seca6g01480 607 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 7 606 IPR044567 GO:0080188
Seca6g01480 607 Gene3D - 4 292 IPR038718 -
Seca6g01480 607 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 413 574 IPR001650 -
Seca6g01480 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 253 IPR027417 -
Seca6g01480 607 SMART ultradead3 23 256 IPR014001 -
Seca6g01480 607 Pfam SNF2-related domain 36 350 IPR000330 GO:0005524|GO:0140658
Seca6g01480 607 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 251 IPR014001 -
Seca6g01480 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 589 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01480 Seca-Chr6 64724779 64726602 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01480 453 562 RAD5 or RAD16-like Gene Family AT5G05130 36.036 4.48e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca6g01480 SNF2_N 3.1e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01480 K10875 - gmx:100811703 858.596